PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa018657 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 474aa MW: 51690.5 Da PI: 8.5712 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.9 | 2.8e-16 | 290 | 335 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRd+iN+++ +L++l+P+a K +Ka++Le+++eY+k+Lq Lsa018657 290 HNQSERRRRDKINQKMKTLQKLVPNA-----NKTDKASMLEEVIEYLKQLQ 335 9************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.37E-19 | 282 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.549 | 285 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-16 | 290 | 339 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-18 | 290 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-14 | 290 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-17 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MSQCVPSWDV DDNPDHNSNV GRLKINLRAS SNSMFPNDVP KLDYEVAELT WKNGQVAMHG 60 LGPPRVVNKA TAAFSKYAWD KPRAAETLEA IVNQATFLPY GKSQMEFYAD DLVPWLHSQT 120 SNLATGSASA SVTMAMDALV PSSNTHLQTL RSAANGSVVP GSTRVASCSG DQSGFMDQRV 180 ARSGAAAAHE WSSCKDQSVS GSETFAGMES GLQMTVETCE REFGGKAFTS ISTGSPENTT 240 SGKRSTESTS PDDNDSVGHS KRQKVSNMEE KKKGKGKGKS SERSRAAAIH NQSERRRRDK 300 INQKMKTLQK LVPNANKTDK ASMLEEVIEY LKQLQAQIHM MSRINMSPMM MPLAMQQQQL 360 QMAMMNPMGM GMGMGIGMGM GMAMPGVMDL NSIGANRSSI PGMPPVFHPS SFMQPTMTSW 420 DMHNTADRVP NQNDPMNAFL ACQSQPMTMD GYTRMAALFQ QMQSQPCYSG PKNN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 298 | ERRRRD |
2 | 294 | 299 | RRRRDK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023739754.1 | 0.0 | transcription factor UNE10-like | ||||
TrEMBL | A0A2J6K2E8 | 0.0 | A0A2J6K2E8_LACSA; Uncharacterized protein | ||||
STRING | XP_002511647.1 | 1e-143 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-78 | bHLH family protein |