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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lsa018149 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 279aa MW: 30785.2 Da PI: 4.9523 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 64.3 | 2.4e-20 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+r ++fdfl div +
Lsa018149 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEVTLQRGAKTLNSMHLKQCVQRFNVFDFLRDIVGK 86
5789*************************************************************************9976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 1.6E-26 | 3 | 72 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 2.3E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| SuperFamily | SSF47113 | 4.19E-20 | 18 | 88 | IPR009072 | Histone-fold |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 279 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEVTLQRGAK 60 TLNSMHLKQC VQRFNVFDFL RDIVGKVPDL GGSDAAGDER SATKRRKVAD DDHNDGDEDS 120 KRDKPIDPLH ANGSSRGRGR GRGRGRGRIS RAERESHLAA AASSHEHDSD SANKQKPIPD 180 SIEDTDSKRN HITGIVKTEY TVKVRNFDLN LDLDENGDTP VVSPTPVIPA DPIPAGPPPE 240 PEYPGWSLAE VEKMAIDPVQ LANLNSGVDE DEEDYDEEG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1jfi_A | 3e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 137 | 146 | RGRGRGRGRG |
| 2 | 137 | 147 | RGRGRGRGRGR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023763069.1 | 0.0 | dr1-associated corepressor-like | ||||
| TrEMBL | A0A2J6LFH3 | 0.0 | A0A2J6LFH3_LACSA; Uncharacterized protein | ||||
| STRING | EOY32947 | 6e-92 | (Theobroma cacao) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 3e-61 | nuclear factor Y, subunit C11 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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