PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018020

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 282aa MW: 31190.3 Da PI: 9.6178

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-17176	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.9	9.4e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l +v+++G+g Wk I + R+ ++k++w++ Lsa018020 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQKDPEfnhflYSRSNIDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.111	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-17	2	58	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-9	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-15	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	5.26E-21	6	56	No hit	No description
SuperFamily	SSF46785	5.44E-15	120	200	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	8.2E-17	120	185	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	24.105	122	190	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.2E-13	122	196	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.9E-10	125	183	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQKDPEFNHF LYSRSNIDLK DKWRNMSVSA 60 NGQGPREKSR TPKPKATTDS PATAIPLAIT WTPGSSAAAV VDPASTDVQM DDSSKCLLDG 120 KTASKYNTMI YEALSTLKDP NGSDTSAIVS FIEKRHEVPQ NFRRLLSSRL RRLVAQEKLE 180 KVQNCYRLRR ESANGTKGPI SKPKEIRPRI SQVNSYLGGT LEEAAVAAAY QVAEAENKSF 240 VAAEAVKEAE RVSKMAEEAE AFLQLAKEIY ERCSRGEVVM VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023744424.1	0.0	telomere repeat-binding factor 4-like
Swissprot	F4IEY4	2e-75	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	A0A2J6JSC8	0.0	A0A2J6JSC8_LACSA; Uncharacterized protein
STRING	XP_009757029.1	1e-124	(Nicotiana sylvestris)

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]