PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Lsa017834

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

ZF-HD

Protein Properties

Length: 338aa MW: 36608.6 Da PI: 8.8303

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684439	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	111.1	5.9e-35	63	120	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAas+GghavDGCgEfmps +++ +++++lkCaACgCHRnFHRr+++e Lsa017834 63 VVTYRECLKNHAASMGGHAVDGCGEFMPSATSTpTDPTSLKCAACGCHRNFHRRDPDE 120 589************************99999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-21	47	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.5E-29	64	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.4E-31	65	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.647	66	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.34E-17	210	281	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-28	213	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.8E-25	222	278	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDVTSPPPTT TTTTTPTTSS IKALDQDARI QPNSVQKQLP PPFTNGVLKR HKPRHHHNPT 60 PVVVTYRECL KNHAASMGGH AVDGCGEFMP SATSTPTDPT SLKCAACGCH RNFHRRDPDE 120 SFLNSPPVQH LIEYQPHHRH HPPPPQPQPI SLGGVRGSSS SPADSPSPPP ISSSYYPSAP 180 HMLLALSAGL SAQAPENHHN PSIHFTPSSA GGSIIGSNSN GKKRFRTKFT QDQKEKMHEL 240 AERVGWKMQK RDEDLIIGFC NEIGVDKGVF KVWMHNNKMT FGIKKDSGNH NNDNGSPGGG 300 IDFLTNRNNH HEHHQPPHND SISSGGNAIG TNGSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-18	223	278	18	73	ZF-HD homeobox family protein
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758368.1	0.0	zinc-finger homeodomain protein 9-like
TrEMBL	A0A2J6LQG5	0.0	A0A2J6LQG5_LACSA; Uncharacterized protein
STRING	XP_010257380.1	6e-92	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	2e-28	homeobox protein 23