PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017813
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 300aa    MW: 32821.3 Da    PI: 6.1825
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32123987PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-42649PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.21.4e-1534124186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ + +L++a  ++  +l+rg+l++++W+e+++ +     + ++ +r+ +qCk++++ l+k+yk +k++ ++ + + +s++p++++l+
  Lsa017813  34 CWSEDATSTLVDAWGRRYLELNRGNLRQKDWQEIADSVnarhgHTKKTRRTDVQCKNRIDTLKKKYKVEKARVSESNGQITSSWPFYSRLD 124
                7*************************************99888888999***********************999999999*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-2632126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGDELALINS PSPVASAGGN HPNSSRPLPF REDCWSEDAT STLVDAWGRR YLELNRGNLR  60
QKDWQEIADS VNARHGHTKK TRRTDVQCKN RIDTLKKKYK VEKARVSESN GQITSSWPFY  120
SRLDSLIGSA ATAKKSSSSS PPTAVPLPYR KPPSTVLSSQ FPQPLAVLPQ KRPLPVAAAV  180
DDSYFRRNYS AVAAAAAAAE EDGSEDDESL GTSDEEGGAG GEGVRKEGGG DSECMKRLAR  240
AIERFGEIYE RVEGEKQKQM IELEKQRMQF TKDFGSSEDA IVHGYTGSAG EDKASKEDSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023741312.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2J6JZ360.0A0A2J6JZ36_LACSA; Uncharacterized protein
STRINGVIT_10s0003g01300.t011e-107(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-54sequence-specific DNA binding transcription factors