PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 533aa    MW: 58865.9 Da    PI: 5.9756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690945PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-50385PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12346391454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  Lsa017580 346 NHVEAERQRREKLNQRFYALRSVVPNV-----SRMDKASLLADAVCYINEL 391
                799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-4230207IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.685342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-17344407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-13345396No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16346403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10346391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-15348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEDLIVSPSS SSSIVSFPNT NTPPPSDTIQ QKLQTLLQNQ PQPWAYAIFW QTFNDDSNGC  60
VSLSWGDGHF QSNNDVPNTT LPSSGSSATF LSDSDPDCRK SVLKEIQALL GPDNRDDAEW  120
FYVISLTRSF IPGDGSVPGT SFGSSSMIWL TGADQLQSFN CERAKEARIH GLETLVCIPT  180
PNGVVEMGSY HVIEETWSLA HQARSLFGGG SSSASCSPPN TLPNFFHHKH HETTSTTNPM  240
KLDNLNEEHH NIISFADMVL MAGGLQEEEG MNMIDFESAT ADHQMSKNLG RSCMNKNTIP  300
TTTTNTYVET GSEHSDSDCQ LVLATSERRM QKKKGKKTGG RDPPVNHVEA ERQRREKLNQ  360
RFYALRSVVP NVSRMDKASL LADAVCYINE LKGKVENLES QLHPRSNSQG KTKRVKVEMA  420
DTVDNHLQSS STSSLYQARV STKPTIKVNS KTSGFREVEV KIVGEDAMIR VQSGNADLPA  480
AKLMDALREM KAQIQHASMS CVNEIMLQDV VVKIPGAIDE DELKTDLIRR LDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-36272077192Transcription factor MYC3
4rqw_B8e-36272077192Transcription factor MYC3
4rs9_A8e-36272077192Transcription factor MYC3
4yz6_A8e-36272077192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753528.10.0transcription factor MYC2-like
TrEMBLA0A2J6MJR80.0A0A2J6MJR8_LACSA; Uncharacterized protein
STRINGPOPTR_0002s17750.11e-142(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-50bHLH family protein