PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa017580 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 533aa MW: 58865.9 Da PI: 5.9756 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.7e-12 | 346 | 391 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L Lsa017580 346 NHVEAERQRREKLNQRFYALRSVVPNV-----SRMDKASLLADAVCYINEL 391 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.4E-42 | 30 | 207 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.685 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-17 | 344 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.30E-13 | 345 | 396 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 346 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-10 | 346 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-15 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MEDLIVSPSS SSSIVSFPNT NTPPPSDTIQ QKLQTLLQNQ PQPWAYAIFW QTFNDDSNGC 60 VSLSWGDGHF QSNNDVPNTT LPSSGSSATF LSDSDPDCRK SVLKEIQALL GPDNRDDAEW 120 FYVISLTRSF IPGDGSVPGT SFGSSSMIWL TGADQLQSFN CERAKEARIH GLETLVCIPT 180 PNGVVEMGSY HVIEETWSLA HQARSLFGGG SSSASCSPPN TLPNFFHHKH HETTSTTNPM 240 KLDNLNEEHH NIISFADMVL MAGGLQEEEG MNMIDFESAT ADHQMSKNLG RSCMNKNTIP 300 TTTTNTYVET GSEHSDSDCQ LVLATSERRM QKKKGKKTGG RDPPVNHVEA ERQRREKLNQ 360 RFYALRSVVP NVSRMDKASL LADAVCYINE LKGKVENLES QLHPRSNSQG KTKRVKVEMA 420 DTVDNHLQSS STSSLYQARV STKPTIKVNS KTSGFREVEV KIVGEDAMIR VQSGNADLPA 480 AKLMDALREM KAQIQHASMS CVNEIMLQDV VVKIPGAIDE DELKTDLIRR LDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 8e-36 | 27 | 207 | 7 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-36 | 27 | 207 | 7 | 192 | Transcription factor MYC3 |
4rs9_A | 8e-36 | 27 | 207 | 7 | 192 | Transcription factor MYC3 |
4yz6_A | 8e-36 | 27 | 207 | 7 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023753528.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | A0A2J6MJR8 | 0.0 | A0A2J6MJR8_LACSA; Uncharacterized protein | ||||
STRING | POPTR_0002s17750.1 | 1e-142 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 4e-50 | bHLH family protein |