PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016517

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 360aa MW: 40446.1 Da PI: 6.7146

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-41207	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	45	89	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Lsa016517 45 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 89 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-17	39	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.476	40	94	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.8E-17	43	92	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-13	44	92	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-10	45	85	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-14	45	88	IPR001005	SANT/Myb domain
CDD	cd00167	1.57E-10	47	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MVCESMAEDR SEEGSDSNTN KNDQFTSQDD YAPKVRKPYT ITKQRERWTE EEHKKFLEAL 60 KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVVRESTGD VSEVKPIEIP PPRPKRKPMH 120 PYPRKLSAPI KTGGHGQHAR ATSPNSSGSD QENQSPTSVL SAGGSNVFGL GDSGSPNTES 180 SPEENESPPP MKMESCSEEK DFGSTQSLKL FGKTVVITDS NQNEEKNTTM PISSLPCGAP 240 VYYMQFLDEN MESTVVRSSP SVTPWWGVYG HVSSYPLGQQ LCNPVNMEGC SDSESVGGKD 300 EEEDDYENEK KKKKPFLLIG SERSAFTKQH SKKKDTCMKG FVPYKRCVEE REEQRIRLCL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MVCESMAEDR SEEGSDSNTN KNDQFTSQDD YAPKVRKPYT ITKQRERWTE EEHKKFLEAL  60
KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF SKVVRESTGD VSEVKPIEIP PPRPKRKPMH  120
PYPRKLSAPI KTGGHGQHAR ATSPNSSGSD QENQSPTSVL SAGGSNVFGL GDSGSPNTES  180
SPEENESPPP MKMESCSEEK DFGSTQSLKL FGKTVVITDS NQNEEKNTTM PISSLPCGAP  240
VYYMQFLDEN MESTVVRSSP SVTPWWGVYG HVSSYPLGQQ LCNPVNMEGC SDSESVGGKD  300
EEEDDYENEK KKKKPFLLIG SERSAFTKQH SKKKDTCMKG FVPYKRCVEE REEQRIRLCL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023773188.1	0.0	protein REVEILLE 1
TrEMBL	A0A2J6KT80	0.0	A0A2J6KT80_LACSA; Uncharacterized protein
STRING	VIT_04s0079g00410.t01	1e-77	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	4e-53	MYB_related family protein