PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016185
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HSF
Protein Properties Length: 477aa    MW: 53639.8 Da    PI: 5.5157
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688240PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-9905PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124e-35601502101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+ ++e++sws+n nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+ll++i+
     Lsa016185  60 FLLKTYDMVDDSMTDEIVSWSTNRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFAKDQKHLLKNIH 147
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     Lsa016185 148 RRK 150
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3756149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.11E-3556149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-6056149IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3060149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186083IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
RRLPVDGKES TXHDVLVKRL QFRGFPKSSA DTTXESPKME GNQAVSGGGG GGGGGGPAPF  60
LLKTYDMVDD SMTDEIVSWS TNRNSFVVWN PPEFARLLLP TYFKHNNFSS FIRQLNTYGF  120
RKIDPERWEF ANEEFAKDQK HLLKNIHRRK PIHSHSNPQS STIDPERAAF EEEIDKLTRE  180
KTSLEKNITR FKQQQPVSKL QVEDLTHRVN TIEERQDTLL TFLKKAAQNP DFVEHLAQKL  240
ESMDFSADNK KRRFFPEDNN NTNTNSLPQS PSRPDFGNIF HRDFSNKLRL ELSPAVSDIN  300
FVSNSTQSSN EDNGTGSPQI IVSERTHGSL PFNQETQELS DSCTSFGFNM DSSFINKTCL  360
DSNKDTTKGH DSCQLNLTLA SCVSQIDTCQ DTDTMPQSFE EIGKPPEWAA AAARVPEKNT  420
TPAAPVAPAA AQTRVNDVFW EQFLTERPGS LDVEEASSNL RANSSFENSR NLQNLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-215114917129Heat shock factor protein 1
5d5v_B6e-215114917129Heat shock factor protein 1
5d5v_D6e-215114917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748685.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-129HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A2J6JI610.0A0A2J6JI61_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000118711e-169(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-129HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]