PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016018

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 657aa MW: 73059.6 Da PI: 8.3614

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-9170	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.7e-08	40	87	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrw 44 W t+E++ll+ av+++ +++W++I++++ +t+ +c +++ Lsa016018 40 VWGTWEELLLAYAVNRYDTKSWDSISSELRkrssapILLTPHHCEEKY 87 6*****************************777777446777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0076	37	93	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-6	40	87	IPR001005	SANT/Myb domain
CDD	cd00167	8.90E-4	41	91	No hit	No description
SMART	SM00297	1.7E-7	333	441	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	2.0E-10	341	440	IPR001487	Bromodomain
SuperFamily	SSF47370	3.4E-13	342	438	IPR001487	Bromodomain
CDD	cd04369	3.14E-12	344	436	No hit	No description
PROSITE profile	PS50014	10.305	359	422	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MAVEEINIEK KTERNPSAMT KSDQEREPED TKGSPPATTV WGTWEELLLA YAVNRYDTKS 60 WDSISSELRK RSSAPILLTP HHCEEKYGEL KRRFNQSDED DVEMDDGSDT TTTTTAIPWL 120 DELRKLRVLE LQRELQNYDL YISSLQLKVK KLTEESEKTG GEPKKKSDLG QRNEEIEIKK 180 AEEEAKNETP EPVVSGDEDS DRDNQSVNGS NGNLETGVEK SENENENENE NENENEASPV 240 GTGDEKPESA ALSPVREEDS CNGRPEGKEE PVKTEPDGEA SEAPESIAES KSEGTTKENS 300 DVQSSASKSK KERVDRMRRG SIKGDERENE DQSTDSIPVR SLPLVDFLHK LHKLGSALFD 360 RRLDRQEKLR YKNLIRQHID YEILQTRLKE GWYSDGNDKF FRDLLLLVNN TRIFFPKDSP 420 ESTAATDLQK LILKEMTSKK KQKSDSKSAD KQNSSSKPKI PPDSSLLLKP KLTGPIVVCR 480 KRSSITGKGD RRKEQPDLKK GKNPSSSQDH GKPSSANNEA SDTKNEKKKK LTEAEEKKQS 540 AAKFLNRMKR TSSNSNEPLN SLKSNSVGGG GGYDSDSKEQ KRGGGSNKGG GGGGGEGKKD 600 QGSKKKGKEQ GSPAKRSVGR PPKRAAAPPQ VLGKRNRESG ESAETLGSKQ TKKRSKR

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MAVEEINIEK KTERNPSAMT KSDQEREPED TKGSPPATTV WGTWEELLLA YAVNRYDTKS  60
WDSISSELRK RSSAPILLTP HHCEEKYGEL KRRFNQSDED DVEMDDGSDT TTTTTAIPWL  120
DELRKLRVLE LQRELQNYDL YISSLQLKVK KLTEESEKTG GEPKKKSDLG QRNEEIEIKK  180
AEEEAKNETP EPVVSGDEDS DRDNQSVNGS NGNLETGVEK SENENENENE NENENEASPV  240
GTGDEKPESA ALSPVREEDS CNGRPEGKEE PVKTEPDGEA SEAPESIAES KSEGTTKENS  300
DVQSSASKSK KERVDRMRRG SIKGDERENE DQSTDSIPVR SLPLVDFLHK LHKLGSALFD  360
RRLDRQEKLR YKNLIRQHID YEILQTRLKE GWYSDGNDKF FRDLLLLVNN TRIFFPKDSP  420
ESTAATDLQK LILKEMTSKK KQKSDSKSAD KQNSSSKPKI PPDSSLLLKP KLTGPIVVCR  480
KRSSITGKGD RRKEQPDLKK GKNPSSSQDH GKPSSANNEA SDTKNEKKKK LTEAEEKKQS  540
AAKFLNRMKR TSSNSNEPLN SLKSNSVGGG GGYDSDSKEQ KRGGGSNKGG GGGGGEGKKD  600
QGSKKKGKEQ GSPAKRSVGR PPKRAAAPPQ VLGKRNRESG ESAETLGSKQ TKKRSKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023760565.1	0.0	cylicin-1-like
TrEMBL	A0A2J6MGX2	0.0	A0A2J6MGX2_LACSA; Uncharacterized protein