PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015854
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 470aa    MW: 52769.8 Da    PI: 10.3783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693759PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-15400PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07944137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     ++ W t+E+++l  av ++G+g+W+ I++++  +Rt 
        Lsa015854  9 KKVWGTWEELILGGAVLRHGTGDWDVISSELR-TRTV 44
                     578*****************************.9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.73E-5763IPR009057Homeodomain-like
PfamPF002494.3E-6945IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-4944IPR009057Homeodomain-like
CDDcd001671.33E-41258No hitNo description
SMARTSM002971.6E-1490345IPR001487Bromodomain
SuperFamilySSF473709.68E-19239345IPR001487Bromodomain
Gene3DG3DSA:1.20.920.109.9E-16242347IPR001487Bromodomain
PfamPF004392.5E-10251329IPR001487Bromodomain
PROSITE profilePS5001410.663256326IPR001487Bromodomain
CDDcd043692.34E-7258340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDDVSVVLKK VWGTWEELIL GGAVLRHGTG DWDVISSELR TRTVCPYYFT PEACRTRYED  60
LQQRYTGCKF WYDELRERRV AELKRELEKS QESIGFLVSK LENLKSKKVN CNQIDYDSSQ  120
TESPPPSLPK TKGIKIKTVH KQGSKDEFEL SSGSFTQDLE TNPQPQSHSP SLASSQNIEV  180
KLEVPESCMN NTMIELSNEK SGTIRKRRGK RKRKDGNWNE ASTSGMQSSS VDLQEGESCR  240
WGPQSDDLVG IFNSVTENQY ALVFRRRLDS QKRARYRKTI RQHMDLDTIR SKIANCGIKS  300
TRELFRDLLL LANNALVFYS KRTREYKSAM LLRGLVSKRY KQLCSDSSSS SSSMPLSSIL  360
CFSSISSPPV RPRSVRPRAP CKQPKLVVKF PSSGPIGGPH GYLKVSSNSD SGTLNPEIEG  420
SKSNVDFHGN QKIAKRGLGR PRRVGGGGRG GKQPPPTPRN SSNGKKAHQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RRGKRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763448.10.0uncharacterized protein LOC111911921
TrEMBLA0A2J6LEK50.0A0A2J6LEK5_LACSA; Uncharacterized protein
STRINGXP_009592883.11e-115(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-31DNA-binding bromodomain-containing protein