PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa015700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 29522.1 Da PI: 9.5168 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.5e-13 | 33 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48 rg++ + E+ l ++++ ++G+ W++Iar+++ gRt++++k++w++++ Lsa015700 33 RGKMAPHEERLVLELHSKFGNSlsvavglcslqrfsxlaVWSKIARKLP-GRTDNEIKNYWRTHM 96 788899***************9***************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.437 | 1 | 27 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.07E-16 | 13 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 13 | 41 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.202 | 28 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-10 | 32 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-10 | 33 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-7 | 38 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-17 | 42 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
TMRLHSKWFQ GLKRTGKSCR LRWVNYLHPG LKRGKMAPHE ERLVLELHSK FGNSLSVAVG 60 LCSLQRFSXL AVWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKKRTSLSR SPSPSFSHSS 120 SSSSICTSNP TIDSMPMIET KERSFYDTGG VEMFSVMKGK NKNNNNSFKK AATRVSDSSE 180 GHEGYCSMDD IWKDIDLDLL EDDHSIKPVF DPYSEIAVPS LTWEYNYCSS TSWTFNGQEE 240 FGKDMISLTS QQFSAGLTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-13 | 14 | 100 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 7e-13 | 14 | 100 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-13 | 14 | 100 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-13 | 14 | 100 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-13 | 14 | 100 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-13 | 14 | 100 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023761053.1 | 1e-127 | transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 1e-46 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2J6LJX4 | 1e-105 | A0A2J6LJX4_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 3e-43 | myb domain protein 48 |
Publications ? help Back to Top | |||
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