PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa015598 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 302aa MW: 33885.3 Da PI: 8.9817 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 129 | 181 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ h e+Er+RR+++ + ++ Lr llP + ++K s ++ +Av+YIk++q Lsa015598 129 RKLVHREIERQRRQDMAKLYASLRGLLPLEF--VKGKRSTSDHMHQAVNYIKHMQ 181 5678*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-14 | 126 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.80E-10 | 128 | 185 | No hit | No description |
PROSITE profile | PS50888 | 13.719 | 128 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 129 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-11 | 129 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-5 | 134 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
IVPTVEDLIT RRISGITSKR VFYTHIHQIH RQSNLCGLKD QLRXIMFSFQ QSDELVFHEI 60 PCSISFQQPA TNQQDLIVEL HDHVNMEGNS NISVGKARKR QGDQSPSSKP NSVTTDGGGG 120 DCKDEHTQRK LVHREIERQR RQDMAKLYAS LRGLLPLEFV KGKRSTSDHM HQAVNYIKHM 180 QESIKALSIK RDRLKKDVET SVPGPMMNSN EKNITHPFRN TVSISSCKGG VQILINSGST 240 EGGVPLSAVL KAITEEGLNI ITCTSTKVNE RLLLSIQSEA NDQVLMDLSM LQQRLTAVVN 300 DY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023754793.1 | 0.0 | transcription factor bHLH36 isoform X1 | ||||
TrEMBL | A0A2J6LYL0 | 1e-169 | A0A2J6LYL0_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 4e-43 | bHLH family protein |