PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 302aa    MW: 33885.3 Da    PI: 8.9817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29964236PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-3289PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13129181155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+  h e+Er+RR+++ + ++ Lr llP  +   ++K s ++   +Av+YIk++q
  Lsa015598 129 RKLVHREIERQRRQDMAKLYASLRGLLPLEF--VKGKRSTSDHMHQAVNYIKHMQ 181
                5678*************************65..*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-14126198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-10128185No hitNo description
PROSITE profilePS5088813.719128180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-11129181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5134186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
IVPTVEDLIT RRISGITSKR VFYTHIHQIH RQSNLCGLKD QLRXIMFSFQ QSDELVFHEI  60
PCSISFQQPA TNQQDLIVEL HDHVNMEGNS NISVGKARKR QGDQSPSSKP NSVTTDGGGG  120
DCKDEHTQRK LVHREIERQR RQDMAKLYAS LRGLLPLEFV KGKRSTSDHM HQAVNYIKHM  180
QESIKALSIK RDRLKKDVET SVPGPMMNSN EKNITHPFRN TVSISSCKGG VQILINSGST  240
EGGVPLSAVL KAITEEGLNI ITCTSTKVNE RLLLSIQSEA NDQVLMDLSM LQQRLTAVVN  300
DY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754793.10.0transcription factor bHLH36 isoform X1
TrEMBLA0A2J6LYL01e-169A0A2J6LYL0_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-43bHLH family protein