PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015345
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 186aa    MW: 21236.1 Da    PI: 7.2592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674659PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-111163255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
               r+    +E++RR +++  +++L +l+P+ +   +s+   s  + L++A +YIk+Lq
  Lsa015345 11 RVDRRTVEKNRRIHMKALYSKLHSLVPHnS---SSREvISLPDQLQEAANYIKKLQ 63
               5566789*********************44...88888*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.71E-7767No hitNo description
SuperFamilySSF474591.44E-10977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.395962IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-101178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-71463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00681568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEFNPTSSSS RVDRRTVEKN RRIHMKALYS KLHSLVPHNS SSREVISLPD QLQEAANYIK  60
KLQIKLEKMN EEKDNLMGIQ KLEINHEDKI KNSNLMVGQQ RIPRIDVRGT GSSLEAILIT  120
GVDFQFLFSE TIRVIHEEGF DVINATFSIV NDTVFHTIHA QIGENYAQEN GVSRITERLN  180
SIAYGI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768864.11e-135transcription factor bHLH162
TrEMBLA0A2J6MET41e-133A0A2J6MET4_LACSA; Uncharacterized protein
STRINGXP_010108177.11e-68(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-45bHLH family protein