PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Lsa015161

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GeBP

Protein Properties

Length: 399aa MW: 44438.8 Da PI: 4.3159

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687443	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-45149	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	116.9	1.1e-36	115	214	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d+++++g+ + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ k++ gke +f+++hdq +f+ls kiW+ Lsa015161 115 LFQRLWTDEDEIELLQGFLDYTTQRGTnnssHHHHDTAAFYDQIKGKLQLDFNKNQLVEKLRRLKKKYRNVLGKISIGKEYVFKSPHDQATFDLSCKIWN 214 79***********************864333459*************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.1E-34	116	214	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGSDEEDHIT AVYGEEDLDE EDDEESEEED HTLQNQHVEE DDVDMIDDEE DDEEEDDSMS 60 SAAGEVTIAV AGIPSVPTTV DATPTTATTT TTSIVRSDAI VEVKKPMPLD DSRRLFQRLW 120 TDEDEIELLQ GFLDYTTQRG TNNSSHHHHD TAAFYDQIKG KLQLDFNKNQ LVEKLRRLKK 180 KYRNVLGKIS IGKEYVFKSP HDQATFDLSC KIWNGAAATP VFIPATADGG GIDDDEPHNP 240 NLIFNLNENN ANDIADPNSS EKKVPRPRKR SKSTAVKIEE NSNQQQHYGQ PVGVGASNPQ 300 NPAVSNLVEE TVKSCLLPLF KELVNNSPNG ACASSRGIGL GGMNMNNFGG SMNFPIGDMT 360 DDKWRKQHIL ELEVYSKRLE LMQDQIKSRL EELRSMGSS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGSDEEDHIT AVYGEEDLDE EDDEESEEED HTLQNQHVEE DDVDMIDDEE DDEEEDDSMS  60
SAAGEVTIAV AGIPSVPTTV DATPTTATTT TTSIVRSDAI VEVKKPMPLD DSRRLFQRLW  120
TDEDEIELLQ GFLDYTTQRG TNNSSHHHHD TAAFYDQIKG KLQLDFNKNQ LVEKLRRLKK  180
KYRNVLGKIS IGKEYVFKSP HDQATFDLSC KIWNGAAATP VFIPATADGG GIDDDEPHNP  240
NLIFNLNENN ANDIADPNSS EKKVPRPRKR SKSTAVKIEE NSNQQQHYGQ PVGVGASNPQ  300
NPAVSNLVEE TVKSCLLPLF KELVNNSPNG ACASSRGIGL GGMNMNNFGG SMNFPIGDMT  360
DDKWRKQHIL ELEVYSKRLE LMQDQIKSRL EELRSMGSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023753185.1	0.0	probable transcription factor At5g28040
TrEMBL	A0A2J6M1W7	0.0	A0A2J6M1W7_LACSA; Uncharacterized protein
STRING	Solyc02g083750.1.1	1e-108	(Solanum lycopersicum)
STRING	PGSC0003DMT400009206	1e-108	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	9e-66	DNA-binding storekeeper protein-related transcriptional regulator