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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lsa014285 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 288aa MW: 30676.9 Da PI: 4.6165 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 58.3 | 1.7e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ ++ +v++ ++fdfl ++v +
Lsa014285 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86
5789************************************************************************99976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 1.8E-26 | 2 | 72 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 4.37E-20 | 3 | 88 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 1.9E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 288 aa Download sequence Send to blast |
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAAGGA VGSGDDRTMV KRKKTAADET 120 NESDEELKRN RMNEAGQTGS NGRGRGRGRG RGRGRGRSSA DREAPQTDIE LESCTPLIPS 180 TTTTAATAAA AATTAISDGG RDFDLNAGVD ENMEKASDGL AGGAPPPPPL PESVPGGGGD 240 GGSEAAEVKN EEYLGGSLSE MDRMVIDTGN LGQINSRLDE EDEDYDEE |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1jfi_A | 9e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 146 | 155 | RGRGRGRGRG |
| 2 | 146 | 156 | RGRGRGRGRGR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023766247.1 | 0.0 | dr1-associated corepressor-like | ||||
| TrEMBL | A0A2J6L8P0 | 0.0 | A0A2J6L8P0_LACSA; Uncharacterized protein | ||||
| STRING | XP_006432367.1 | 5e-83 | (Citrus clementina) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 7e-66 | nuclear factor Y, subunit C11 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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