PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa014241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28827.5 Da PI: 4.8434 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.1 | 8.4e-56 | 78 | 182 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp Lsa014241 78 QLQSFWANQyreIENVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 177 89******99999*************************************************************************************** PP NF-YC 98 rdelk 102 r+++k Lsa014241 178 REDIK 182 *9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.87E-33 | 69 | 172 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-21 | 100 | 163 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 101 | 178 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDPQGHGQPQ SSNMMSSVTQ LSYATNPYES TQLSGTPGRV QVGGAIQATN QPTAAQLAQQ 60 QLAYQQIQQQ QQQQLQQQLQ SFWANQYREI ENVTDFKNHS LPLARIKKIM KADEDVRMIS 120 AEAPIVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRED 180 IKDEGMTSMP AVTVPVGGPS DAFPYYYMPA QQSPQSGAPG MMSNKAMLDP ALYAQQAPPY 240 MGPAIWPPPP QQPQSPSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-62 | 86 | 178 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023761221.1 | 0.0 | nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 2e-79 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2J6LJI8 | 0.0 | A0A2J6LJI8_LACSA; Uncharacterized protein | ||||
STRING | XP_008246497.1 | 1e-128 | (Prunus mume) |