PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa013731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 41100 Da PI: 8.5995 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.2e-09 | 324 | 371 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lsa013731 324 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 371 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-14 | 318 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-9 | 318 | 375 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-14 | 320 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 320 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 324 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-7 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDRDFFLNAG LHFEPQTQMP SWKLMASAPE MNCPPAQSSL GRFNNFESAF SSMVSSPVSN 60 SVAPNDTFAV RELIGKLGSI CNGDGEVSPA AMAPAAAAPL NSPPRKFDWP AVDHFGKENQ 120 LNLRDSIPLG SGFPSLTADP GFAERAAKFS SFGSRSFNGR TSQSGLNSSN PDLQFRSSVS 180 PLMRNARMPR VYSSPSLKMD GSAMAIRENK NMAETHMANG LGCEYKSNSN EESSVSEQMQ 240 IGLRNPDDSN SRKRKAASSK GKAKEIASSV VKEEGSDDSN LKRQKKTEED TNVETEKNPK 300 LPEPPKDYKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKALML 360 DEIINYVQSL QGQVE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023737611.1 | 0.0 | transcription factor bHLH62-like isoform X2 | ||||
TrEMBL | A0A2J6K738 | 0.0 | A0A2J6K738_LACSA; Uncharacterized protein | ||||
STRING | XP_004292343.1 | 1e-100 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 6e-42 | bHLH family protein |