PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa013616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 39828.4 Da PI: 7.5379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 213 | 256 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++Er+RR+ri+++++ Lr l+Pk + K++ a+i+ A+eYIk+Lq Lsa013616 213 MAERNRRNRIKDGLFALRALVPKiS------KMDRASIVGDAIEYIKELQ 256 79*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.1E-13 | 2 | 133 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 14.869 | 206 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 208 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.50E-14 | 208 | 260 | No hit | No description |
SMART | SM00353 | 9.4E-16 | 212 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 212 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-11 | 213 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MAWDYCIVWQ FGDDPSRYIE WTGCCCNGSR GVCRNVKEEI DATKQHFPQL CRDTYIKHSL 60 KTKACEKLAK IPFHLPLYSG IHGEVAMSAQ PAWIHDTFGT QVLIPVNGGL IELYTSKQVP 120 RDEIVIELLT TQFNTFSAQH ILNPKIEASP NVSYPWSEHS SLVSVDSTQV SPTQSDVNQP 180 INLLGYDISG EAKEYAKTKQ KTGKKHHQSN SLMAERNRRN RIKDGLFALR ALVPKISKMD 240 RASIVGDAIE YIKELQKNVQ ELEDELKGLE EDDLKSHEDE VEVCKQKRAN QPSPVKKGHT 300 KTEVKVEVHQ IGAKEFLVKI VCGKKRGGFS RTMEIVDSLR LEVVDIHVTT CNG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023748493.1 | 0.0 | transcription factor bHLH90-like | ||||
TrEMBL | A0A2J6JIJ1 | 0.0 | A0A2J6JIJ1_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10610.1 | 5e-64 | bHLH family protein |