PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa013616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 353aa    MW: 39828.4 Da    PI: 7.5379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683105PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13213256755
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                ++Er+RR+ri+++++ Lr l+Pk +      K++ a+i+  A+eYIk+Lq
  Lsa013616 213 MAERNRRNRIKDGLFALRALVPKiS------KMDRASIVGDAIEYIKELQ 256
                79*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-132133IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.869206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16208270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-14208260No hitNo description
SMARTSM003539.4E-16212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16212271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11213256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAWDYCIVWQ FGDDPSRYIE WTGCCCNGSR GVCRNVKEEI DATKQHFPQL CRDTYIKHSL  60
KTKACEKLAK IPFHLPLYSG IHGEVAMSAQ PAWIHDTFGT QVLIPVNGGL IELYTSKQVP  120
RDEIVIELLT TQFNTFSAQH ILNPKIEASP NVSYPWSEHS SLVSVDSTQV SPTQSDVNQP  180
INLLGYDISG EAKEYAKTKQ KTGKKHHQSN SLMAERNRRN RIKDGLFALR ALVPKISKMD  240
RASIVGDAIE YIKELQKNVQ ELEDELKGLE EDDLKSHEDE VEVCKQKRAN QPSPVKKGHT  300
KTEVKVEVHQ IGAKEFLVKI VCGKKRGGFS RTMEIVDSLR LEVVDIHVTT CNG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748493.10.0transcription factor bHLH90-like
TrEMBLA0A2J6JIJ10.0A0A2J6JIJ1_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.15e-64bHLH family protein