PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa013217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 23965.2 Da PI: 8.456 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.5e-15 | 73 | 117 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky Lsa013217 73 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVVTRTPTQVASHAQKY 117 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.727 | 66 | 122 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-17 | 67 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-18 | 69 | 121 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.3E-13 | 70 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.74E-12 | 73 | 118 | No hit | No description |
Pfam | PF00249 | 8.6E-13 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
XLVPGFGHDG PVAGEDGGGC DXDSIRNCED DVSSIEAGLY PKSPPYGGGG KRSPVDVIAA 60 GRPVEQERKK GVPWTEEEHK LFLLGLKKYG KGDWRNISRN YVVTRTPTQV ASHAQKYFIR 120 QLSGGKDKRR ASIHDITDSE VNENQNSLPK NKRTSPEQCK FQWSHPGGGG GDAAMAFDQT 180 NGSMFMSPRY KGNGGLHEFY GGSQSMVFQM QPAMHYPHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023739238.1 | 1e-135 | transcription factor DIVARICATA-like isoform X3 | ||||
Swissprot | Q8S9H7 | 3e-64 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2J6K3E8 | 1e-127 | A0A2J6K3E8_LACSA; Uncharacterized protein | ||||
TrEMBL | A0A2J6K3F0 | 1e-127 | A0A2J6K3F0_LACSA; Uncharacterized protein | ||||
STRING | POPTR_0009s04730.1 | 4e-74 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 5e-37 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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