PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Lsa012509

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WRKY

Protein Properties

Length: 191aa MW: 21185.1 Da PI: 6.0148

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58671484	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92	4.5e-29	102	160	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs+fpr+YY+C+++ C ++k+ve+s+ dp+v+++ Y+geH h+ Lsa012509 102 SDTWAWRKYGQKPIKGSPFPRNYYKCSTTkACGARKQVEQSHVDPTVFIVSYSGEHMHP 160 7***********************99889*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-29	87	162	IPR003657	WRKY domain
SuperFamily	SSF118290	1.28E-24	96	162	IPR003657	WRKY domain
PROSITE profile	PS50811	30.503	96	162	IPR003657	WRKY domain
SMART	SM00774	3.1E-31	101	161	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	103	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
XNTTTSDDGF DMVETVASGN EIYQFSYSNT GENQSEGLEE VYKEGCSQRL GTTATAVVSG 60 DDEQLPVFDG SCDSFSNETP SRKRKNQQKK VVVELTQEEL CSDTWAWRKY GQKPIKGSPF 120 PRNYYKCSTT KACGARKQVE QSHVDPTVFI VSYSGEHMHP RPTHRSPLAG STRSNKSTMA 180 HLPPPISDDC P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-18	93	162	8	77	Probable WRKY transcription factor 4
2lex_A	1e-18	93	162	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728918.1	1e-142	probable WRKY transcription factor 27 isoform X1
Swissprot	Q9FLX8	3e-47	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A2J6ME01	1e-133	A0A2J6ME01_LACSA; Uncharacterized protein
STRING	A0A087GAI1	6e-47	(Arabis alpina)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]