PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Lsa012288

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 190aa MW: 22065.7 Da PI: 8.2291

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58672419	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl Lsa012288 16 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP
2	Myb_DNA-binding	55.8	1e-17	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Lsa012288 69 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-23	9	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.77	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-12	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-16	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.59E-10	18	63	No hit	No description
PROSITE profile	PS51294	25.859	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-25	67	118	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	69	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.60E-12	73	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEKKSMNSSQ DVEVRKGPWT MEEDLILINY IANHGEGVWN SLARSAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ 120 AENFSGQTSS GHTDQATTSS TQTCNVLNPM ETYSPPYDNF QNFSGPFPTE TNENMWSMED 180 LWSMQLLNSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-25	13	118	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023760197.1	1e-142	myb-related protein 305-like
Swissprot	P81391	6e-96	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A251RP86	1e-136	A0A251RP86_HELAN; Putative myb protein
STRING	XP_009618404.1	1e-103	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]