PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa012107
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 188aa    MW: 20666.2 Da    PI: 5.1583
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58673790PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.9e-41301291100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca+ Cvlap+fp ++p kf ++h++FG sn++k+l++lpe++r da+ss+vyeA+ar+rdP yG++g i++lq+q+++l+a+la++++e
  Lsa012107  30 PCAACKILRRRCAETCVLAPHFPPDEPLKFIMAHRVFGSSNIIKFLQELPESQRGDAVSSMVYEANARIRDPAYGSAGAIFQLQNQVNELQAQLAKAQAE 129
                7***********************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.95329130IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4030127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASHHANDTL QPKLSSPSTS SLPMSVVVTP CAACKILRRR CAETCVLAPH FPPDEPLKFI  60
MAHRVFGSSN IIKFLQELPE SQRGDAVSSM VYEANARIRD PAYGSAGAIF QLQNQVNELQ  120
AQLAKAQAEV FNIQCQYAAL FCIETGQSPQ SSSHQSFDGF VTGSDESFQS SNLSFYLDQD  180
SLWDTIWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-403013511116LOB family transfactor Ramosa2.1
5ly0_B8e-403013511116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733693.11e-138LOB domain-containing protein 1-like
SwissprotQ9LQR03e-63LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK088e-63LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2J6MCK71e-119A0A2J6MCK7_LACSA; Uncharacterized protein
STRINGXP_006488170.16e-74(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-56LOB domain-containing protein 11