 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lsa012078 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
| Family |
HSF |
| Protein Properties |
Length: 342aa MW: 38176.6 Da PI: 7.8994 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Lsa#S58683058 | PU_unref | Unigene | View CDS |
| PUT-187a-Lactuca_sativa-35995 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 116 | 2.4e-36 | 27 | 117 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d++++++isw+e+g+sfvv++++efak++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k+ll++i+
Lsa012078 27 FLTKTYQLVDDKTIDDVISWNEDGSSFVVWNPTEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDR---------WEFSNDCFRRGEKRLLCDIQ 114
9****************************************************************999.........******************** PP
XXX CS
HSF_DNA-bind 99 rkk 101
r+k
Lsa012078 115 RRK 117
*98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MAPPPVERSG GESTAADTTS RSLPTPFLTK TYQLVDDKTI DDVISWNEDG SSFVVWNPTE 60
FAKDLLPKYF KHNNFSSFVR QLNTYGFRKL VPDRWEFSND CFRRGEKRLL CDIQRRKIAS 120
ASPAPAIAAT PVTTVAALSP VHPVTVSPSN SGEEQVVSSN SSRGATTYLS RETTASGGTN 180
AELIDENERL RKENVQLNKE LSQMKNLCNR IYMMMSNYAT NYNNPSEGNT NTSQQQTATA 240
ETTTVTPLNL LPLKRLSEDR DGSGSRRRSP EPEEDISPRL FGVPIGVKRA REEAAEQHHE 300
PRVHVKLEPS DDTAKGVGNG VDCKEARWMM KHCQRSDRKV LL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 1e-25 | 27 | 122 | 20 | 125 | Heat shock factor protein 1 |
| 5d5u_B | 2e-25 | 27 | 116 | 29 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 2e-25 | 27 | 116 | 29 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 2e-25 | 27 | 116 | 29 | 129 | Heat shock factor protein 1 |
| 5hdg_A | 1e-25 | 27 | 116 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_A | 1e-25 | 27 | 116 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_B | 1e-25 | 27 | 116 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_C | 1e-25 | 27 | 116 | 10 | 110 | Heat shock factor protein 1 |
| 5hdn_D | 1e-25 | 27 | 116 | 10 | 110 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
