PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa011819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 202aa MW: 23338.8 Da PI: 5.6527 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.2e-15 | 16 | 56 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Lsa011819 16 PHEERLVLEYHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 56 68***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.762 | 6 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 7.7E-11 | 10 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-13 | 16 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-10 | 16 | 56 | No hit | No description |
SuperFamily | SSF46689 | 2.34E-11 | 16 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-19 | 16 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGELSASGVE KRKDDPHEER LVLEYHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA 60 QEHKRVSSPS SSFSNSSSSS SICTNDPTVQ SMPMNETKER SFYDTGGIEM VPASRGKNTN 120 TSMKHNKDTS EEQEKIYSMD EIWKDIDLLE NDDLKPSFDH YSDVTPSRIW DYSVNSFWMM 180 DGGQQEFGTD MFFPATSELL TG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023748294.1 | 1e-127 | transcription factor MYB48-like | ||||
Swissprot | Q9LX82 | 3e-38 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2J6JIW9 | 1e-137 | A0A2J6JIW9_LACSA; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 3e-49 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.3 | 2e-38 | myb domain protein 48 |
Publications ? help Back to Top | |||
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