PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa011298

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 764aa MW: 84927.2 Da PI: 6.6686

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-16654	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.6e-10	356	397	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT eE +++av+ +G++ ++ I+r++ +R++ +ck ++ k Lsa011298 356 DWTDEEKSSFLQAVRSYGKD-FSMISRCLK-KRSRDECKVFYSK 397 6***************99.****9.******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-11	210	270	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.339	222	273	IPR017884	SANT domain
SMART	SM00717	1.3E-6	223	271	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-11	351	403	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.117	352	403	IPR017884	SANT domain
Pfam	PF15963	8.6E-8	353	397	No hit	No description
SMART	SM00717	3.6E-7	353	401	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	355	397	IPR009057	Homeodomain-like
CDD	cd00167	4.62E-7	357	395	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
XEDVGNDDVL GFVPSCGDRS SSTVSDGEDV DNGREDDKLY HFIFATNKVI ANETSDELNR 60 ILLPTTHLCN KISKSTDESL NKTKIASRKR FLKLKERVIT SKFRVLQHAW KEDLQLLSVK 120 KTGGKSQKKF ESSSRMGYAD HQKYCSSIHS RLYPSGGSVS LVPSTEALDY VKKLLSDSRV 180 KVQRKTLKMP CLILDRSERM MTRFVSDNGL VEDPVEVEKE RSIVGXLEEE EQKIFLEKYS 240 LFGKDFKKIA SFLKNKTCGD CVEFYYKNHK SDCFQKIKKK SAFAKGMSCI TNTYLVTSGR 300 RMAADATSLE MLGAASEMVA SVDGEHKLHS EMFCNAQETG AGDESCGGEM NPTSSDWTDE 360 EKSSFLQAVR SYGKDFSMIS RCLKKRSRDE CKVFYSKARK CLGLDSIHSK AGDGGDDGDV 420 DHGHDDTCMV DSGSVISCDK SSSDVKMEVE DLLHSSDSKQ EVPESESEQI VVKEESKQLQ 480 DLNSRDSSIC MDLSIEQQPV NNNNTNHMEL NGVEKSKGCE DNGFLPGVSS HRKSVSQDDI 540 DTSSRLSFRK SIGGSQRCSS TDGYHHLPKH SLMDCVESSQ VVQKDENLLP EHCLPRDSCL 600 QKPSQRQRQG EGEGDVKLFG QILIKPSLSL SGSKTNTSSL QENGEKRKSS FNLKFDIDNN 660 TNNDHGLSEV PLRRSYGFWD GNRIQTTGFP SLPDPSSILV SGFGNSSSSS SVKTGFQTRQ 720 VYSYKNQEPF KGVLVSDPVA AIRMHYAKTE QYNNGSNSGD IGSR

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

XEDVGNDDVL GFVPSCGDRS SSTVSDGEDV DNGREDDKLY HFIFATNKVI ANETSDELNR  60
ILLPTTHLCN KISKSTDESL NKTKIASRKR FLKLKERVIT SKFRVLQHAW KEDLQLLSVK  120
KTGGKSQKKF ESSSRMGYAD HQKYCSSIHS RLYPSGGSVS LVPSTEALDY VKKLLSDSRV  180
KVQRKTLKMP CLILDRSERM MTRFVSDNGL VEDPVEVEKE RSIVGXLEEE EQKIFLEKYS  240
LFGKDFKKIA SFLKNKTCGD CVEFYYKNHK SDCFQKIKKK SAFAKGMSCI TNTYLVTSGR  300
RMAADATSLE MLGAASEMVA SVDGEHKLHS EMFCNAQETG AGDESCGGEM NPTSSDWTDE  360
EKSSFLQAVR SYGKDFSMIS RCLKKRSRDE CKVFYSKARK CLGLDSIHSK AGDGGDDGDV  420
DHGHDDTCMV DSGSVISCDK SSSDVKMEVE DLLHSSDSKQ EVPESESEQI VVKEESKQLQ  480
DLNSRDSSIC MDLSIEQQPV NNNNTNHMEL NGVEKSKGCE DNGFLPGVSS HRKSVSQDDI  540
DTSSRLSFRK SIGGSQRCSS TDGYHHLPKH SLMDCVESSQ VVQKDENLLP EHCLPRDSCL  600
QKPSQRQRQG EGEGDVKLFG QILIKPSLSL SGSKTNTSSL QENGEKRKSS FNLKFDIDNN  660
TNNDHGLSEV PLRRSYGFWD GNRIQTTGFP SLPDPSSILV SGFGNSSSSS SVKTGFQTRQ  720
VYSYKNQEPF KGVLVSDPVA AIRMHYAKTE QYNNGSNSGD IGSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023740198.1	0.0	uncharacterized protein LOC111888282 isoform X3
TrEMBL	A0A2J6K1F0	0.0	A0A2J6K1F0_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-53	MYB family protein