PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Lsa011062

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 356aa MW: 40045.1 Da PI: 8.6072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58682463	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.7e-06	194	213	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C ksF+r nL+ H+ Lsa011062 194 FSCPVCFKSFTRYNNLQMHM 213 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.57E-5	187	216	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-6	194	213	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.388	194	221	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.68E-5	263	301	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.6E-4	264	298	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
XTNPTFLKGC FPFISHHPYY YLYHSSDNQS SASHPYLNMS SSLSSSPPPL KEALPLLSKL 60 NLKRDLELEH RYPTYNTAIE DKNGCSFSTS TTTNTGSTTT VNVTLNIGLP TSYSQEKGIN 120 GDEVLLGFPC CPKQKGVNGE EMVHGFHWCP NASGKTGVTT RNETLLGFPL NTLKKTKEYW 180 IPNPSQILAG PNQFSCPVCF KSFTRYNNLQ MHMWGHGSQY RKGPESLKGS QPTAMLKLPC 240 YCCAPGCKHH IDHPRSRPLK DFRTLQTHYK RKHGTKPFVC RKCGKAIAVK GDWRTHEKNC 300 GRIWYCNCGS DFKHKRSLKD HVKAFGDGHV GASGTDLFQE QEDDEDEGML SEIEYM

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

XTNPTFLKGC FPFISHHPYY YLYHSSDNQS SASHPYLNMS SSLSSSPPPL KEALPLLSKL  60
NLKRDLELEH RYPTYNTAIE DKNGCSFSTS TTTNTGSTTT VNVTLNIGLP TSYSQEKGIN  120
GDEVLLGFPC CPKQKGVNGE EMVHGFHWCP NASGKTGVTT RNETLLGFPL NTLKKTKEYW  180
IPNPSQILAG PNQFSCPVCF KSFTRYNNLQ MHMWGHGSQY RKGPESLKGS QPTAMLKLPC  240
YCCAPGCKHH IDHPRSRPLK DFRTLQTHYK RKHGTKPFVC RKCGKAIAVK GDWRTHEKNC  300
GRIWYCNCGS DFKHKRSLKD HVKAFGDGHV GASGTDLFQE QEDDEDEGML SEIEYM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023766953.1	0.0	protein TRANSPARENT TESTA 1-like
Swissprot	Q8W030	1e-104	ZWIP4_ARATH; Zinc finger protein WIP4
Swissprot	Q8W031	1e-104	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A2J6L791	0.0	A0A2J6L791_LACSA; Uncharacterized protein
STRING	EOX96700	1e-112	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	1e-101	WIP domain protein 4

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]