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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Lsa011038 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 177aa MW: 20442.3 Da PI: 6.5198 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Lsa#S29953309 | PU_ref | Unigene | View CDS |
| PUT-187a-Lactuca_sativa-3096 | PU_unref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 79.5 | 2.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienks r+vtfskRr+g++KKA LS LCda+va+i+fs gkly ++s
Lsa011038 9 KRIENKSSRSVTFSKRRTGLIKKARHLSLLCDADVALIVFSAPGKLYQFCS 59
79***********************************************96 PP
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| 2 | K-box | 27.8 | 1e-10 | 98 | 158 | 22 | 82 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82
+k + e Lq+ R + ++ e+Lsl ++ qLe++L+++l + Rs+K++l ++ i++lq+
Lsa011038 98 TKFRTCKELLQEVDRLVEENNTEELSLTDMTQLEEELHDALVQTRSRKTQLKMDYISTLQE 158
56666677788888888888899************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MGRRKLEIKR IENKSSRSVT FSKRRTGLIK KARHLSLLCD ADVALIVFSA PGKLYQFCSS 60
ASNSMAHLLA TYEKSRLEPE SGTIEGDDQD LELPLQCTKF RTCKELLQEV DRLVEENNTE 120
ELSLTDMTQL EEELHDALVQ TRSRKTQLKM DYISTLQEEV SFNIDFFKEK FKYPSHS
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