PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010837

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 593aa MW: 65838 Da PI: 7.4982

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58693173	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.3e-08	49	91	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + Lsa010837 49 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 91 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.32E-10	42	96	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.416	45	96	IPR017884	SANT domain
SMART	SM00717	2.7E-6	46	94	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-6	49	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	49	94	IPR009057	Homeodomain-like
CDD	cd00167	5.13E-6	49	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MESQIPFEKE ASTSTQHHDD VFIKDVITSE TNHVASSQPV KKATRQWAAW TRQEEESFFT 60 ALRQVGKNFE KITSRVQSKN KDQVRHYYYR LVRRMNKLLG PELSLDAKNS KDTNAAMLRW 120 WSLLEKHSCK ASKLHLKPRR FKMFLETLEH QLLKDRKKNI RKRSTATQGG NGSHPVKPPR 180 QRRRSGTAPT TTTTTTTDAY KKWEKAAIAG VSLVADAAEH LERTALDKLA DTVQDLQGGD 240 KGSDPIPKTK SIIPPVPIFH QNILSSMKLK LQLFPVDETT RRALEMDNHN PHLELTLSTR 300 KKISSVLEHM TRKWGSSTVA ASGELKLVPY DVQTSNLSNS QKWNQDSLLT AGDVYALIGS 360 PPVFRLRYGW FGKGEESNNG IGIGGSVGMG LSTLDWVDSL TNVSVGDLLS EVSHNAVGPT 420 PCHQQISYSC DSFDAAIAAH INKNHDAKNN GFHSTTIQSS IYDAEETCDA FSFPKNNTDK 480 PQMIPSPSLN QKSPEPEEPK ECEFDENHIP PPKDLTSLTD MYWPESLGAL DLDVASCRYH 540 DTGDVILSDS LGLGGLNCSL DAFQSCSFFG LEKKDTTTLT TLGPPASSSQ GEV

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MESQIPFEKE ASTSTQHHDD VFIKDVITSE TNHVASSQPV KKATRQWAAW TRQEEESFFT  60
ALRQVGKNFE KITSRVQSKN KDQVRHYYYR LVRRMNKLLG PELSLDAKNS KDTNAAMLRW  120
WSLLEKHSCK ASKLHLKPRR FKMFLETLEH QLLKDRKKNI RKRSTATQGG NGSHPVKPPR  180
QRRRSGTAPT TTTTTTTDAY KKWEKAAIAG VSLVADAAEH LERTALDKLA DTVQDLQGGD  240
KGSDPIPKTK SIIPPVPIFH QNILSSMKLK LQLFPVDETT RRALEMDNHN PHLELTLSTR  300
KKISSVLEHM TRKWGSSTVA ASGELKLVPY DVQTSNLSNS QKWNQDSLLT AGDVYALIGS  360
PPVFRLRYGW FGKGEESNNG IGIGGSVGMG LSTLDWVDSL TNVSVGDLLS EVSHNAVGPT  420
PCHQQISYSC DSFDAAIAAH INKNHDAKNN GFHSTTIQSS IYDAEETCDA FSFPKNNTDK  480
PQMIPSPSLN QKSPEPEEPK ECEFDENHIP PPKDLTSLTD MYWPESLGAL DLDVASCRYH  540
DTGDVILSDS LGLGGLNCSL DAFQSCSFFG LEKKDTTTLT TLGPPASSSQ GEV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764545.1	0.0	TSL-kinase interacting protein 1-like
Refseq	XP_023764546.1	0.0	TSL-kinase interacting protein 1-like
Refseq	XP_023764547.1	0.0	TSL-kinase interacting protein 1-like
Swissprot	Q8LJT8	1e-141	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A2U1P7J1	0.0	A0A2U1P7J1_ARTAN; Homeodomain-like protein
STRING	cassava4.1_002262m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.1	1e-142	TSL-kinase interacting protein 1