PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Lsa010343

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 871aa MW: 96074.9 Da PI: 8.6637

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-47292	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00062	725	747	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F+ ++ + +H+ H Lsa010343 725 HQCGICGLRFKVQEPFDNHMEWH 747 79******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.90	1.9E-43	80	202	IPR008942	ENTH/VHS
PROSITE profile	PS51391	39.018	81	209	IPR006569	CID domain
SuperFamily	SSF48464	2.35E-38	81	202	IPR008942	ENTH/VHS
SMART	SM00582	1.8E-47	84	206	IPR006569	CID domain
CDD	cd03562	4.62E-32	88	197	No hit	No description
Pfam	PF04818	4.9E-8	137	190	IPR006903	RNA polymerase II-binding domain
PROSITE pattern	PS00028	0	727	747	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MEMDNTSRGR SFDRSSRNPA TLKKPRLVTE EPTILRSNNN PNGNNRPIVQ RPSVGFRPAV 60 ERDGDSESYQ PQSLSQIKQQ QHQELVSQYR TALAELTFNS KPIITNLTII AGENAQAAKA 120 IAATICNNII EVPSDQKLPS LYLLDSIVKN IGRDYIRHFS TKLPEVFCKA YRQVDSALHS 180 GMRHLFGTWK GVFPPQSLQS IEKELGFSTV GNGNGNGNVS SSGLTTSRPE SQPQRPARSI 240 HVNPKYLEAR QKLQQSNRPK VAASDISTTR ADPRLKLHQA QRDPESDLTN ENYEFGSDIS 300 SPSEGSFGKS NGRVGEQGLE KTWYGSVSNT TDTISRLERN GHTLSSNYSL HKSSIPDVKS 360 QPINNLIKGS GEVSRSWKNS EEEEYLWDDV SSRTVNPILT SSNSSKRDPR LYFDPDRPGF 420 DNRLQKSQRM HEKESSPDLP SAEQRIPLPS TSLRAKGSFS TDENSFVGAS RNLLHGSKVF 480 PSSSSGVSVS TSLDSLSRIS LQSLKAARSQ GQISQDSQKS KLQNLHPMKR TPFPPPHQEP 540 VSEPSVQFQP QPQPPKPLPV PRQQKPVVAD IPGLSSTSSL LAAVSSIFGK KTTTQSMSSS 600 LKIPSSHEST SLSSSLLGTT PSTQSTTLPN PESNVSSLLS TLLSKGLISA SEDNNNKNNN 660 INNNNNNNNK SDDVIATQTP KLTPKVSSKS VVINNKSVVG LEFKPDVIRE FNPCVISELI 720 DDLPHQCGIC GLRFKVQEPF DNHMEWHVLK NSESNTPNTK SSRRWFLKAE NWVNGESDFD 780 FDPGSTTQET FLIDGEQMVT ADETQIVCVL CGEIFDDFYN QERNKWMFKR AAYLNIGNGG 840 TRGVIVHENC VSVNSLSDLG LANDVKVEKS V

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MEMDNTSRGR SFDRSSRNPA TLKKPRLVTE EPTILRSNNN PNGNNRPIVQ RPSVGFRPAV  60
ERDGDSESYQ PQSLSQIKQQ QHQELVSQYR TALAELTFNS KPIITNLTII AGENAQAAKA  120
IAATICNNII EVPSDQKLPS LYLLDSIVKN IGRDYIRHFS TKLPEVFCKA YRQVDSALHS  180
GMRHLFGTWK GVFPPQSLQS IEKELGFSTV GNGNGNGNVS SSGLTTSRPE SQPQRPARSI  240
HVNPKYLEAR QKLQQSNRPK VAASDISTTR ADPRLKLHQA QRDPESDLTN ENYEFGSDIS  300
SPSEGSFGKS NGRVGEQGLE KTWYGSVSNT TDTISRLERN GHTLSSNYSL HKSSIPDVKS  360
QPINNLIKGS GEVSRSWKNS EEEEYLWDDV SSRTVNPILT SSNSSKRDPR LYFDPDRPGF  420
DNRLQKSQRM HEKESSPDLP SAEQRIPLPS TSLRAKGSFS TDENSFVGAS RNLLHGSKVF  480
PSSSSGVSVS TSLDSLSRIS LQSLKAARSQ GQISQDSQKS KLQNLHPMKR TPFPPPHQEP  540
VSEPSVQFQP QPQPPKPLPV PRQQKPVVAD IPGLSSTSSL LAAVSSIFGK KTTTQSMSSS  600
LKIPSSHEST SLSSSLLGTT PSTQSTTLPN PESNVSSLLS TLLSKGLISA SEDNNNKNNN  660
INNNNNNNNK SDDVIATQTP KLTPKVSSKS VVINNKSVVG LEFKPDVIRE FNPCVISELI  720
DDLPHQCGIC GLRFKVQEPF DNHMEWHVLK NSESNTPNTK SSRRWFLKAE NWVNGESDFD  780
FDPGSTTQET FLIDGEQMVT ADETQIVCVL CGEIFDDFYN QERNKWMFKR AAYLNIGNGG  840
TRGVIVHENC VSVNSLSDLG LANDVKVEKS V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	1e-14	85	205	8	135	PCF11 protein
1sz9_B	1e-14	85	205	8	135	PCF11 protein
1sz9_C	1e-14	85	205	8	135	PCF11 protein
1sza_A	1e-14	85	205	8	135	PCF11 protein
1sza_B	1e-14	85	205	8	135	PCF11 protein
1sza_C	1e-14	85	205	8	135	PCF11 protein
2bf0_X	1e-14	85	205	13	140	PCF11
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745992.1	0.0	polyadenylation and cleavage factor homolog 4-like isoform X1
TrEMBL	A0A2J6JP95	0.0	A0A2J6JP95_LACSA; Uncharacterized protein