PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa009820 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 490aa MW: 55583.1 Da PI: 8.5181 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 338 | 382 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + Er RR +i +++ +L+e++P+ +kK s a+iL ++ +YIk+L Lsa009820 338 TATERLRRIKISEKLRQLQEVVPSM----NKKTSVADILGLTLDYIKEL 382 578*********************8....8*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.200.20 | 1.2E-23 | 11 | 88 | No hit | No description |
SuperFamily | SSF56112 | 1.48E-67 | 11 | 296 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS50011 | 32.909 | 24 | 299 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 2.5E-25 | 24 | 299 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 2.1E-39 | 27 | 293 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 30 | 55 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 2.6E-38 | 89 | 295 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 146 | 158 | IPR008271 | Serine/threonine-protein kinase, active site |
PROSITE profile | PS50888 | 14.361 | 332 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-12 | 333 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.49E-9 | 335 | 387 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 337 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-10 | 338 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-8 | 338 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MSDLKRFEHL KVQLEAIRSA TNNFGENHLI GKGGFGKVYK GELFHCEGHT TVALKCLDRA 60 FGQGDREFWN EILMLSLYKH ENIVPLLGFC DDGGEKILVY KYASRRGLDL YLNSNNLTWV 120 RRLEICIGAA RGLTYLHNPG ETKQRVLHRD IKSSNILLDE NWNAMIADFG LSKFCPADLQ 180 YSFIFSNPVG TFGYWDPLYT ETGLLTKESD VYSFGVVLFE VLCGRLCTGN HDNSQSFTEL 240 VRKHYKEHNL NGIIFGNIKD KINRSSLKVF SVIAYQCLKR DRNKRPLMNE ILAALETALE 300 YQQNDLGNTG AMDKLKQLQE SVPLESRAKG DPTTRPRTAT ERLRRIKISE KLRQLQEVVP 360 SMNKKTSVAD ILGLTLDYIK ELHSEAEGPN RKRKGAAVTI GRDDTMENSK KPSNKATHEN 420 TVTIGNGFAP ILNQEKEHLV KIEKNQDIDS ATGIKEPDLV EFSSLRQTTM DLDPYKDAVA 480 EIVSAKRRXW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2qkw_B | 7e-60 | 2 | 304 | 19 | 319 | Protein kinase |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023728141.1 | 0.0 | probable serine/threonine-protein kinase PBL26 isoform X1 | ||||
TrEMBL | A0A2J6KSY6 | 0.0 | A0A2J6KSY6_LACSA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-18 | bHLH family protein |