PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 403aa    MW: 45123.7 Da    PI: 6.5134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-41206PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12337382655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Lsa009814 337 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 382
                689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-16334395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.58E-13335386No hitNo description
Gene3DG3DSA:4.10.280.103.2E-16336394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-14337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDSDLHNQRQ QQQQKLQQQQ QGQQTMNSGL TRYRSAPSSY FSNLINSGMY EDEDVDPFFN  60
PRSSSPETER ILSRLISGDG DNSSSHQNIG QIRGNDPPFM DPMKQERANF TYQSQQQQMM  120
YQNHQQADHN HNSVVSGSSS ALVDPLAAMN PPTNLLRQSS SPAGFFEHVN MGNGYSAMRS  180
MDKFRTDDGS VPDLSKGFEN RMAFSSVSHS SSRPLSLIPE NEGKTMGMSG AGAHNNGGFG  240
QTHPRSSGYG FPGGSWDEPA MLTDEFMKEL GESDQISSTE NQQNDERRIH ASSGLSHQLS  300
LPTSSSELSV MEKLLQFQDN VPLRSRAKRG CATHPRSIAE RVRRTRISER MRKLQELVPN  360
MDKQTNTADM LDLAVDYIKE LQKQVEKLSD HHAKCTCPNK QEI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751475.10.0transcription factor bHLH130-like isoform X1
RefseqXP_023751476.10.0transcription factor bHLH130-like isoform X1
RefseqXP_023751477.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A2J6M5H80.0A0A2J6M5H8_LACSA; Uncharacterized protein
STRINGXP_009379429.19e-91(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-58bHLH family protein