PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa009814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 45123.7 Da PI: 6.5134 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 337 | 382 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Lsa009814 337 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 382 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 331 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.15E-16 | 334 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.58E-13 | 335 | 386 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-16 | 336 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-14 | 337 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 337 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MDSDLHNQRQ QQQQKLQQQQ QGQQTMNSGL TRYRSAPSSY FSNLINSGMY EDEDVDPFFN 60 PRSSSPETER ILSRLISGDG DNSSSHQNIG QIRGNDPPFM DPMKQERANF TYQSQQQQMM 120 YQNHQQADHN HNSVVSGSSS ALVDPLAAMN PPTNLLRQSS SPAGFFEHVN MGNGYSAMRS 180 MDKFRTDDGS VPDLSKGFEN RMAFSSVSHS SSRPLSLIPE NEGKTMGMSG AGAHNNGGFG 240 QTHPRSSGYG FPGGSWDEPA MLTDEFMKEL GESDQISSTE NQQNDERRIH ASSGLSHQLS 300 LPTSSSELSV MEKLLQFQDN VPLRSRAKRG CATHPRSIAE RVRRTRISER MRKLQELVPN 360 MDKQTNTADM LDLAVDYIKE LQKQVEKLSD HHAKCTCPNK QEI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023751475.1 | 0.0 | transcription factor bHLH130-like isoform X1 | ||||
Refseq | XP_023751476.1 | 0.0 | transcription factor bHLH130-like isoform X1 | ||||
Refseq | XP_023751477.1 | 0.0 | transcription factor bHLH130-like isoform X1 | ||||
TrEMBL | A0A2J6M5H8 | 0.0 | A0A2J6M5H8_LACSA; Uncharacterized protein | ||||
STRING | XP_009379429.1 | 9e-91 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-58 | bHLH family protein |