PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 380aa    MW: 41677.2 Da    PI: 10.3149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-1256387PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10265310655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Lsa009711 265 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 310
                689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-13262323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-10263314No hitNo description
Gene3DG3DSA:4.10.280.104.0E-12264322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-11265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8265310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
XGGCFFTTFI SLHLPHFWQR KIDMYPTSNS SSASQTSGGD PNNINGSNVN GGGGGAQQGL  60
ARYRSAPVSF LTTTVDSVIN GQTQHTTVGN HNMVGGGGTP TRFFSPPDST SSQLSTGDRL  120
QTTSFRLNEF ATAFNGLKGT SQTPSPLFRH GSSPAGFLNT LVSSTPTDGR GSRLSSQLSF  180
TGTSSFSQIS QENDIANSLM FSNSSHNKRA KLDINGLNVM DSELNFGLSE SALEAATMEK  240
MMDLPHDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK KLQDLVPNMD KQTSYSDMLD  300
LAVQHIKGLQ THVQNLNNEX PKLLVWMQTQ MKIILMQQDI EGKSGRVTHD VDRHPRDHKS  360
VIVHVKTTRR PWSYIQWKAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757582.10.0transcription factor bHLH128-like isoform X1
SwissprotQ8H1023e-49BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2J6LS231e-167A0A2J6LS23_LACSA; Uncharacterized protein
STRINGSolyc09g098110.2.17e-71(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]