PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa009711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 380aa MW: 41677.2 Da PI: 10.3149 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1.1e-10 | 265 | 310 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq Lsa009711 265 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 310 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.656 | 259 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-13 | 262 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.98E-10 | 263 | 314 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-12 | 264 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-11 | 265 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-8 | 265 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
XGGCFFTTFI SLHLPHFWQR KIDMYPTSNS SSASQTSGGD PNNINGSNVN GGGGGAQQGL 60 ARYRSAPVSF LTTTVDSVIN GQTQHTTVGN HNMVGGGGTP TRFFSPPDST SSQLSTGDRL 120 QTTSFRLNEF ATAFNGLKGT SQTPSPLFRH GSSPAGFLNT LVSSTPTDGR GSRLSSQLSF 180 TGTSSFSQIS QENDIANSLM FSNSSHNKRA KLDINGLNVM DSELNFGLSE SALEAATMEK 240 MMDLPHDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK KLQDLVPNMD KQTSYSDMLD 300 LAVQHIKGLQ THVQNLNNEX PKLLVWMQTQ MKIILMQQDI EGKSGRVTHD VDRHPRDHKS 360 VIVHVKTTRR PWSYIQWKAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023757582.1 | 0.0 | transcription factor bHLH128-like isoform X1 | ||||
Swissprot | Q8H102 | 3e-49 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A2J6LS23 | 1e-167 | A0A2J6LS23_LACSA; Uncharacterized protein | ||||
STRING | Solyc09g098110.2.1 | 7e-71 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 4e-51 | bHLH family protein |
Publications ? help Back to Top | |||
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