PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa009691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29370.2 Da PI: 6.511 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 8.2e-09 | 154 | 180 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN+++ +L++l+P + Lsa009691 154 SHSLAERLRREKINEKLRRLQDLVPGC 180 8************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.24E-11 | 148 | 205 | No hit | No description |
SuperFamily | SSF47459 | 6.02E-16 | 148 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.888 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-15 | 151 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-6 | 154 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-7 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MELLDNNMKT AVENFNSSDV NFHGFMPMQS GDNFSDHHLR PQRSHPLPFM PVQQDSINSI 60 QSFAFNGDHQ SGAVYDSINH FPTMVETCVL QRDAGMATIV ESFMNSNPPL YDPGCIGENK 120 GYGGKKRKKN KEASGEKPKD VVHVRAKRGE ATDSHSLAER LRREKINEKL RRLQDLVPGC 180 YKTMGMAVML DVIINYVGSL QHQIEFLSMK LSAASMFYDF NTSEMDPLDA MKGNGHETQV 240 IEKMIGEGYG DLPRFQSTWS P |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 124 | 128 | KKRKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023746312.1 | 0.0 | transcription factor bHLH75-like | ||||
Swissprot | A4D998 | 8e-53 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A2J6JNK1 | 0.0 | A0A2J6JNK1_LACSA; Uncharacterized protein | ||||
STRING | XP_009602728.1 | 4e-77 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25330.1 | 4e-52 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|