PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009691
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 261aa    MW: 29370.2 Da    PI: 6.511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-16750PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-09154180430
                HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
        HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                +h+ +Er RR++iN+++ +L++l+P +
  Lsa009691 154 SHSLAERLRREKINEKLRRLQDLVPGC 180
                8************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-11148205No hitNo description
SuperFamilySSF474596.02E-16148219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.888150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6154180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-7156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MELLDNNMKT AVENFNSSDV NFHGFMPMQS GDNFSDHHLR PQRSHPLPFM PVQQDSINSI  60
QSFAFNGDHQ SGAVYDSINH FPTMVETCVL QRDAGMATIV ESFMNSNPPL YDPGCIGENK  120
GYGGKKRKKN KEASGEKPKD VVHVRAKRGE ATDSHSLAER LRREKINEKL RRLQDLVPGC  180
YKTMGMAVML DVIINYVGSL QHQIEFLSMK LSAASMFYDF NTSEMDPLDA MKGNGHETQV  240
IEKMIGEGYG DLPRFQSTWS P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746312.10.0transcription factor bHLH75-like
SwissprotA4D9988e-53BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A2J6JNK10.0A0A2J6JNK1_LACSA; Uncharacterized protein
STRINGXP_009602728.14e-77(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.14e-52bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]