PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa009543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 26459.7 Da PI: 10.2644 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 114 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + + +G+g+W+ I+r + ++t+ q+ s+ qky Lsa009543 114 PWTEDEHRRFLMGLQVHGKGDWRNISRNFVVTKTPTQVASHAQKY 158 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.43 | 12 | 67 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-7 | 13 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-11 | 15 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-5 | 16 | 63 | No hit | No description |
PROSITE profile | PS51294 | 18.312 | 107 | 163 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-16 | 109 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-9 | 111 | 161 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 6.0E-17 | 111 | 162 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 112 | 158 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.7E-11 | 114 | 158 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-8 | 114 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
METSNRLMMQ ESKSSKWTRE QNKWFESALA IFDTETPDRW SNVAALVPGK SEFEVRQQYE 60 ELKADINNIE AGLVPDPGYF TFKSELLQDR RFNSFGSRLF RSRSLDHERR KGIPWTEDEH 120 RRFLMGLQVH GKGDWRNISR NFVVTKTPTQ VASHAQKYFA RQHADGKEKR RPSIHDITTV 180 HLPRTTSFSG DMDKSSPLMV NTQNNGINIR VYNSGLFFQP TRYQVQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-16 | 17 | 98 | 11 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023752924.1 | 1e-171 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 5e-65 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2J6M257 | 1e-163 | A0A2J6M257_LACSA; Uncharacterized protein | ||||
STRING | XP_009776702.1 | 3e-80 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 8e-70 | MYB family protein |
Publications ? help Back to Top | |||
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