PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa009128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | NF-YA | ||||||||
Protein Properties | Length: 295aa MW: 32893.9 Da PI: 6.8014 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.5 | 9e-33 | 126 | 182 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR RgsgGrF Lsa009128 126 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRGSGGRF 182 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.6E-36 | 124 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.239 | 125 | 185 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.9E-28 | 127 | 182 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-25 | 128 | 150 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 130 | 150 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.1E-25 | 159 | 182 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MRENSSDSSS QEQSQDKESQ SEEVLSEEED DVSKETQNAQ SFPSDSYGQE QHNYHQGVPN 60 VLPSNPETLG QVPQLELVGH SIACAPNPYC DPYYSGMMAA YGQPMVHPQF LDMHQARMPL 120 PLEMAQEPVY VNAKQYHAIL RRRQSRAKAE LEKKLIKDRK PYLHESRHQH AMRRVRGSGG 180 RFAKKTQVDS SSKHGGDEDN NNNNNNTTGS GSGMSSSQSV NVNMNSTGMK RVRSNESDES 240 LEAHNEKRRG ELVNSLNARS TYQLHSSDRG DGGSLGQQWI SISSNQASQR AVAMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-21 | 126 | 190 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023751500.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Swissprot | Q9LXV5 | 1e-58 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2J6M574 | 0.0 | A0A2J6M574_LACSA; Uncharacterized protein | ||||
STRING | XP_006470619.1 | 3e-84 | (Citrus sinensis) | ||||
STRING | XP_006446125.1 | 3e-84 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 7e-56 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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