PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008848
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 375aa    MW: 42742.5 Da    PI: 5.2632
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685017PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-39535PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09324373147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++rW+  E++ l  +v ++G+g+Wk+  +        Rt+ ++k++w+++
        Lsa008848 324 KMRWSITEEDTLRTGVLKYGKGNWKLMLNIYRdifVDRTEVDLKDKWRNL 373
                      68**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.011319375IPR017930Myb domain
SuperFamilySSF466892.57E-13322374IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-10323374IPR009057Homeodomain-like
PfamPF002495.4E-8324373IPR001005SANT/Myb domain
CDDcd116601.92E-15326375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDVDIGRWIL EFLIRQHSLD DRLLNVLIRV LPLPNNDPSI TKSLLLRKLE SDIKKGTISE  60
RTLEFLEQIE ELDHREGNTK VSEAMKAAYC AVAVHCTVKL IEESGDDDTY KYFCAVSRIW  120
RGRIEKMEKF DVANGVSLVS DDLLGWMNDL EAGVWVPNYF EKVLVKYKGL DAVDAVCCYV  180
KEAKEKMGPT FLESVAGTLG DDMPRKVLDL GKEEEHHDQI KEVAADGASN DVQCVNANLN  240
REDKGAHNKV VVDDPSPSCD HGEALNANGD DQKEPNVSLM EQNSTAHVFE WSDSIDNSNK  300
DSPKKQPITP LKYKNKKLPQ TRKKMRWSIT EEDTLRTGVL KYGKGNWKLM LNIYRDIFVD  360
RTEVDLKDKW RNLTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311323KYKNKKLPQTRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733216.10.0uncharacterized protein LOC111881057
TrEMBLA0A2J6KGS70.0A0A2J6KGS7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-22TRF-like 5