PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 373aa    MW: 41153.9 Da    PI: 7.1198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689090PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000472352731255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Lsa008340 235 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 273
                6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.738223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-6233277No hitNo description
SuperFamilySSF474595.63E-10233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-7237279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNRGNMLQSS PVQQMLAGGP NNWWSMMATT RPSPPPAPPQ APFFAASPQP HFFHHQYAPP  60
PPVSLSPWHD NHHDFPDSLS QLLMSGLVGE DDKSTLSHMQ QVKKLENWEE QLLHDHHTHH  120
HHQQQQQQIN PMVESGVKQE NSLNYGSSYG HGNVDFHGVK PNTWSNPMIP VSSPNSCISS  180
LSNNMLDFST TMSNKTDGRH PPPDRSSECN STATGGVSKK AKIQPSSNQS TFKVRKEKLG  240
DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS LPYLGSGSGS VRNHQHSVHQ  300
GERNCLFPED PGQLLNDSCM KMKGSALDQD PHDEPKKDLR SRGLCLVPVS CTMQVGSDNG  360
ADYWAPALNG GFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023745223.10.0transcription factor bHLH68
SwissprotQ8S3D13e-93BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2J6MAF10.0A0A2J6MAF1_LACSA; Uncharacterized protein
STRINGVIT_11s0016g03560.t011e-147(Vitis vinifera)
STRINGcassava4.1_010267m1e-147(Manihot esculenta)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]