PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa008340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 41153.9 Da PI: 7.1198 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.00047 | 235 | 273 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Lsa008340 235 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 273 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.738 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.46E-6 | 233 | 277 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-10 | 233 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-7 | 237 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MNRGNMLQSS PVQQMLAGGP NNWWSMMATT RPSPPPAPPQ APFFAASPQP HFFHHQYAPP 60 PPVSLSPWHD NHHDFPDSLS QLLMSGLVGE DDKSTLSHMQ QVKKLENWEE QLLHDHHTHH 120 HHQQQQQQIN PMVESGVKQE NSLNYGSSYG HGNVDFHGVK PNTWSNPMIP VSSPNSCISS 180 LSNNMLDFST TMSNKTDGRH PPPDRSSECN STATGGVSKK AKIQPSSNQS TFKVRKEKLG 240 DRITALHQLV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS LPYLGSGSGS VRNHQHSVHQ 300 GERNCLFPED PGQLLNDSCM KMKGSALDQD PHDEPKKDLR SRGLCLVPVS CTMQVGSDNG 360 ADYWAPALNG GFR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023745223.1 | 0.0 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 3e-93 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2J6MAF1 | 0.0 | A0A2J6MAF1_LACSA; Uncharacterized protein | ||||
STRING | VIT_11s0016g03560.t01 | 1e-147 | (Vitis vinifera) | ||||
STRING | cassava4.1_010267m | 1e-147 | (Manihot esculenta) |
Publications ? help Back to Top | |||
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