PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008285
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 479aa    MW: 53713.2 Da    PI: 6.2329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693818PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000383203571355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLr+l+P+ +      K s  + Le++++++  +q
  Lsa008285 320 RQMIQDRIKELRQLVPNgS------KCSIDSLLEQTIKHMLFMQ 357
                7889*************55......7777789999999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-8646IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142158.3E-1755148IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.156307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00264310357No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGGVELHQEL KNLCVNSDWK YAAFWKLNHG DRMILTCEDV YCNTDDDSYA DNLVELAIVQ  60
MSYSVYSIGE GIIGQVAATG KHVWKSGHQL VNSPNSLDGH FDEWKTQFTS GIRTFAVMAV  120
APFGVIQLGS LKTMAEDLKL MNHIKEIFSH QQTSLMVSTS TDSSPCVTEL STNSGHVNNH  180
NRSRTMNNRW NMSDFICNDQ NQNLFMPITS ETETEESLKF PAGCELYEAL GPAFCNSFNW  240
DTVTTTTETL TVDKMPEETS SSKISGSQHL LEAVVAKGRS TSGSGCYSID MEASCRKVVG  300
PHEQVVKVGK KRARPRPRDR QMIQDRIKEL RQLVPNGSKC SIDSLLEQTI KHMLFMQCVT  360
KHTHKINKSA DFKLVGKEKQ GSSWAMEVGN DLKLCPIIVE NIGVDGQMLV KMMCDECVDF  420
LEMTEAIRSL GLTILKGVTD VYGDKTWMCF VVEGDTNRNI HRVDILWSLL QIWNMKTST
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762468.10.0transcription factor EMB1444-like
SwissprotP0C7P81e-64LHWL1_ARATH; Transcription factor EMB1444
TrEMBLA0A2J6LGP50.0A0A2J6LGP5_LACSA; Uncharacterized protein
STRINGSolyc09g066280.2.11e-125(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-63conserved peptide upstream open reading frame 7