PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa008285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 479aa MW: 53713.2 Da PI: 6.2329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.00038 | 320 | 357 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr+l+P+ + K s + Le++++++ +q Lsa008285 320 RQMIQDRIKELRQLVPNgS------KCSIDSLLEQTIKHMLFMQ 357 7889*************55......7777789999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.8E-8 | 6 | 46 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 8.3E-17 | 55 | 148 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.156 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00264 | 310 | 357 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MGGVELHQEL KNLCVNSDWK YAAFWKLNHG DRMILTCEDV YCNTDDDSYA DNLVELAIVQ 60 MSYSVYSIGE GIIGQVAATG KHVWKSGHQL VNSPNSLDGH FDEWKTQFTS GIRTFAVMAV 120 APFGVIQLGS LKTMAEDLKL MNHIKEIFSH QQTSLMVSTS TDSSPCVTEL STNSGHVNNH 180 NRSRTMNNRW NMSDFICNDQ NQNLFMPITS ETETEESLKF PAGCELYEAL GPAFCNSFNW 240 DTVTTTTETL TVDKMPEETS SSKISGSQHL LEAVVAKGRS TSGSGCYSID MEASCRKVVG 300 PHEQVVKVGK KRARPRPRDR QMIQDRIKEL RQLVPNGSKC SIDSLLEQTI KHMLFMQCVT 360 KHTHKINKSA DFKLVGKEKQ GSSWAMEVGN DLKLCPIIVE NIGVDGQMLV KMMCDECVDF 420 LEMTEAIRSL GLTILKGVTD VYGDKTWMCF VVEGDTNRNI HRVDILWSLL QIWNMKTST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate root development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023762468.1 | 0.0 | transcription factor EMB1444-like | ||||
Swissprot | P0C7P8 | 1e-64 | LHWL1_ARATH; Transcription factor EMB1444 | ||||
TrEMBL | A0A2J6LGP5 | 0.0 | A0A2J6LGP5_LACSA; Uncharacterized protein | ||||
STRING | Solyc09g066280.2.1 | 1e-125 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 4e-63 | conserved peptide upstream open reading frame 7 |