PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Lsa006915

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 356aa MW: 40239.2 Da PI: 9.9034

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686518	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.4e-32	184	237	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Lsa006915 184 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 237 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.68E-15	181	238	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	182	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	184	238	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-7	185	236	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MELFPAQPDL SLQISLPNTK PTSTTWAAST TKQDHHDLDL GNFWKSTLNS QQHHTRPEPS 60 SGLNLPHPTH STNPDINHLH HLLSHQNINR TNLTDQNHHH LGFRSELGFL RPIKGVPVYY 120 HNTNLPKITV LSHNQHQPFL DSFCTGSTTA PTSNTPSSLI HPNNIAQSRF LSTRISSKRS 180 MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTIKT 240 TDKAPASSGQ SDYLEHGLSG DTSDDILLEI QNLKRTNSSA ERKGRSMVHP EEDNQCGLWS 300 NSSREAWLHG KHKDSQINIP TLKKEIIKGM INYERLSEAN SSRMKPNLEF TLGRPQ

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MELFPAQPDL SLQISLPNTK PTSTTWAAST TKQDHHDLDL GNFWKSTLNS QQHHTRPEPS  60
SGLNLPHPTH STNPDINHLH HLLSHQNINR TNLTDQNHHH LGFRSELGFL RPIKGVPVYY  120
HNTNLPKITV LSHNQHQPFL DSFCTGSTTA PTSNTPSSLI HPNNIAQSRF LSTRISSKRS  180
MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTIKT  240
TDKAPASSGQ SDYLEHGLSG DTSDDILLEI QNLKRTNSSA ERKGRSMVHP EEDNQCGLWS  300
NSSREAWLHG KHKDSQINIP TLKKEIIKGM INYERLSEAN SSRMKPNLEF TLGRPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-16	185	239	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738961.1	0.0	probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	5e-61	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2J6K457	0.0	A0A2J6K457_LACSA; Uncharacterized protein
STRING	XP_007158256.1	1e-106	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-63	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]