PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa006911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21868.3 Da PI: 5.1088 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.7e-17 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ ++++++ ++G++ W++Iar+++ gRt++++k++w++++ Lsa006911 2 TPQEERRILELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.599 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.46E-12 | 1 | 43 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MTPQEERRIL ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQEQ KRALSPSSSL 60 SDSSSYSSIY TSNHTVHSMP MMETKEKSFY DTGGLEMLTI TKGESNSNTI TSIATSLNNS 120 SEGEDGYNSM DEIWKNIDLL EDDGIRPIFD TSNEITPSPI WDYSLNTLWM IDGQEEIGSN 180 MFFPDNKRAI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733311.1 | 1e-137 | transcription factor MYB59-like | ||||
TrEMBL | A0A2J6KGI5 | 1e-136 | A0A2J6KGI5_LACSA; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 2e-47 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-38 | myb domain protein 48 |