PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa006710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 28063.7 Da PI: 7.889 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.3e-09 | 193 | 247 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r+rW++eE++ l+++v+++ Wk++ + + Rt+ ++k++w++ Lsa006710 193 RKRWSEEEEDMLKEGVQKFSATanknfPWKKVLEFGRhvfhTSRTPSDLKDKWRN 247 89*******************************9988****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.97E-8 | 23 | 83 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.9E-8 | 23 | 83 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00249 | 1.5E-5 | 27 | 72 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 28 | 71 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50090 | 7.608 | 192 | 249 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-10 | 192 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-10 | 192 | 248 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-7 | 193 | 247 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.55E-13 | 194 | 250 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MASSACVRXV VDEIKGVFMM DFTEKELCVL CERGGKLLVC NDNGCPISVH EDCMGCSPRF 60 NETGNFCCPY CVYRRLTTET CQLRDKAMLA KKALSSFLGE NVAQNQSKSF SSPCESKHET 120 SVSEETDRIP NRNGEFSGVC DGSTCRIMVV YDGDACKEQG MNAKRVPVED EAGSSEKKTT 180 AFNGKPPLLK GKRKRWSEEE EDMLKEGVQK FSATANKNFP WKKVLEFGRH VFHTSRTPSD 240 LKDKWRNISK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023741717.1 | 1e-174 | uncharacterized protein LOC111889798 | ||||
Refseq | XP_023741718.1 | 1e-174 | uncharacterized protein LOC111889798 | ||||
TrEMBL | A0A2J6JY83 | 1e-172 | A0A2J6JY83_LACSA; Uncharacterized protein |