PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006633
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 192aa    MW: 20915.7 Da    PI: 6.5023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676190PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-143783354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               ++h+e+E+rRRdriNs +++Lr ++ ++      K++Ka+ L k+ve++k+L
  Lsa006633 37 KNHSEAEKRRRDRINSHLATLRNVVSTS-----DKMDKATLLGKVVEHLKEL 83
               78************************97.....7****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-143292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4343483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-123783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-143786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-123786No hitNo description
SMARTSM003532.5E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.5E-6123183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
TGGVGVLGLG FSQCFGGGGG GNRGGEWEDG KGGNASKNHS EAEKRRRDRI NSHLATLRNV  60
VSTSDKMDKA TLLGKVVEHL KELKSETMEL SKMCTIPTDL DEVIIDLDSN IGNSSNNVFI  120
KASVCCDDRP ELFSEIKQAL QSLRLTMVQA EMTCLGGRIK CNFIFCVTND THENEMITLK  180
QSLSRIVSTS SW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748593.11e-126transcription factor bHLH51-like
TrEMBLA0A2J6JIB31e-125A0A2J6JIB3_LACSA; Uncharacterized protein
STRINGVIT_13s0067g01350.t012e-52(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-38bHLH family protein