PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa006565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 208aa MW: 22367 Da PI: 10.1084 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.4 | 5.6e-12 | 6 | 85 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl k + f + + ++ + +t++ ++ +v++ ++fdfl ++v + Lsa006565 6 DTRFPAARIKKIMQADEDVGKIAMAVPVL-QKLWNCFCKIFVIXTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 85 5789***********************86.4555555555556667777777888999999999************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-16 | 2 | 71 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.01E-12 | 3 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-12 | 8 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLQKLWNC FCKIFVIXTY DITLRRGAKT 60 VNSLHLKHCV QSYNVFDFLR EVVSKVPDYG HSDAAAGGAV GSGDDRTMVK RKKAAAGETN 120 ESDEELKRNR MNEAGQTGSN GRGRGRGRGR GRGRGRSSAD REAPQTDIEL ESCTPLIPST 180 TTTAATAAAA ATTAISDGGR DFDLNAGG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-14 | 2 | 71 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 145 | 154 | RGRGRGRGRG |
2 | 145 | 155 | RGRGRGRGRGR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023766247.1 | 1e-100 | dr1-associated corepressor-like | ||||
TrEMBL | A0A2J6L8P0 | 2e-98 | A0A2J6L8P0_LACSA; Uncharacterized protein | ||||
STRING | VIT_13s0084g00040.t01 | 2e-63 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-52 | nuclear factor Y, subunit C11 |