PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006157
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family BES1
Protein Properties Length: 287aa    MW: 30801.4 Da    PI: 9.4342
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687285PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822187.17.3e-5821352149
     DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkss 101
                +++r+ptwkErEnnkrRERrRRai+aki+aGLR++Gnyklpk++DnneVlkAL+ eAGw+ve DGttyrkg+kp     ++g s sasp ss+q      
  Lsa006157   2 SGTRMPTWKERENNKRRERRRRAISAKIFAGLRMYGNYKLPKHCDNNEVLKALADEAGWTVESDGTTYRKGCKPA-DWTHIGGSISASPGSSYQ------ 94 
                689************************************************************************.9999**************...... PP

     DUF822 102 alaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                  +sp +s ++sp sss+ sp++  +       sl+p+l++ls++sss
  Lsa006157  95 --QSPYASCNPSPPSSSIASPTTNPHP-----DSLIPWLKNLSSSSSS 135
                ..9999999999999999999885444.....5789999998876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-542117IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSGTRMPTWK ERENNKRRER RRRAISAKIF AGLRMYGNYK LPKHCDNNEV LKALADEAGW  60
TVESDGTTYR KGCKPADWTH IGGSISASPG SSYQQSPYAS CNPSPPSSSI ASPTTNPHPD  120
SLIPWLKNLS SSSSSSSMSS KLPHAYIHNG SISAPVTPPV SSPTAQSPPR IKTSSPWGAP  180
TLSWFSGVRV PQSGPASPTF SLVAANPFGF KETGLGHGGS RMWTPGQSGT CSPAIPLGFD  240
NNADIPMAEV VSEEFAFGRV KPWEGERIHE VCGQDDLELT LGGSKTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-21575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-21575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-21575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-21575372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750611.10.0BES1/BZR1 homolog protein 4-like
SwissprotO494041e-95BEH3_ARATH; BES1/BZR1 homolog protein 3
TrEMBLA0A2J6M7J00.0A0A2J6M7J0_LACSA; Uncharacterized protein
STRINGXP_006467592.11e-109(Citrus sinensis)
STRINGXP_006449559.11e-109(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18890.13e-74BES1/BZR1 homolog 3