PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006129

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 471aa MW: 52859.4 Da PI: 6.1589

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-29472	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.5e-09	348	395	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v+ +G g W+ I + + +Rt+ ++k++w+++l Lsa006129 348 WTVTEVKKLIDGVAHFGVGKWTHIKKLLFsssVHRTPVDLKDKWRNLL 395 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-12	340	397	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.639	340	399	IPR017930	Myb domain
SuperFamily	SSF46689	1.0E-15	342	397	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-9	344	397	IPR001005	SANT/Myb domain
Pfam	PF13921	1.4E-7	348	399	No hit	No description
CDD	cd11660	1.13E-19	348	396	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MNQVEEESLY HSLEEEAIDV DCLLVEPRSD QVSVSSVWCF EEDNIGKCIK TEDASYNLGG 60 SDSNINMECV DTTKLNALDV LPHEVGVENL LTSNGISPCD DYLIDIGYVD HGACIDYVSN 120 EPLHVGNSSS ESPFPMFRNK GNFGIQNSLT DSIPESECQN YFLGNIFGTE SKTVDKFEDF 180 SKSFIDEEED EGNLPLQFAQ TGMELTPFRQ DLITNSAQEH GVGGITHKRS RKPTKRYIDE 240 SSNLTLKNCK KRKEPSSMSK VKMSTVRRVK SQNEVKPKEN IQSSEISFGK AIQVPFISQC 300 PTECEKISLP TTTENQIESF SSGSGDDSET QMMRSMTGGN QRKLHRLWTV TEVKKLIDGV 360 AHFGVGKWTH IKKLLFSSSV HRTPVDLKDK WRNLLKASRA LKGSRVEDEQ KRSQPWRPLP 420 KSILCRVREL ASTYPYPREA NNNSKISKSK FPIVPHVSFS EGIKGNKVPV V

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MNQVEEESLY HSLEEEAIDV DCLLVEPRSD QVSVSSVWCF EEDNIGKCIK TEDASYNLGG  60
SDSNINMECV DTTKLNALDV LPHEVGVENL LTSNGISPCD DYLIDIGYVD HGACIDYVSN  120
EPLHVGNSSS ESPFPMFRNK GNFGIQNSLT DSIPESECQN YFLGNIFGTE SKTVDKFEDF  180
SKSFIDEEED EGNLPLQFAQ TGMELTPFRQ DLITNSAQEH GVGGITHKRS RKPTKRYIDE  240
SSNLTLKNCK KRKEPSSMSK VKMSTVRRVK SQNEVKPKEN IQSSEISFGK AIQVPFISQC  300
PTECEKISLP TTTENQIESF SSGSGDDSET QMMRSMTGGN QRKLHRLWTV TEVKKLIDGV  360
AHFGVGKWTH IKKLLFSSSV HRTPVDLKDK WRNLLKASRA LKGSRVEDEQ KRSQPWRPLP  420
KSILCRVREL ASTYPYPREA NNNSKISKSK FPIVPHVSFS EGIKGNKVPV V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023766659.1	0.0	uncharacterized protein LOC111915216
TrEMBL	A0A2J6L7Q6	0.0	A0A2J6L7Q6_LACSA; Uncharacterized protein