PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa005496 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 387aa MW: 42972 Da PI: 7.7997 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 6e-05 | 283 | 321 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++++ + +K + a++L +A+ YIk Lq Lsa005496 283 RKEKLGDRIAALQQMVAPF-----GKTDTASVLMEAIGYIKFLQ 321 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.611 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-11 | 281 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.27E-5 | 281 | 325 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-9 | 285 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MESSNFHQQH HDHQPLSDSS CYGVSWSQNP ILNNTSNDTN SRDQKQHLGT TPMIHELGLP 60 WNTNNNSNVT SINNPIESFM THELRRLGRT KDEFSGSESY PKFTEMIINS SPTSSIEDMQ 120 LKPDVLFRTF SNGCQIESNY DYQNGSSRSS SRGSFSQIFP TINISNLNQS PANSFDMNLP 180 ALDLFGSPRF NGSFSHPSSF NPHQLGSFFK DTCLSYGLDQ MHQPHRPAIC PSKISSAFNT 240 STTVCTEAKR PATNYIDTKP PQSTLPKKSK MEPRASCAPF KVRKEKLGDR IAALQQMVAP 300 FGKTDTASVL MEAIGYIKFL QNQVETLSVP YMKSTQKSNR LPTSGVSLME DGNEEAKRDL 360 RSRGLCLVPL SCLSYVTDGG GGVWQAP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023771981.1 | 0.0 | transcription factor bHLH110 isoform X1 | ||||
TrEMBL | A0A2J6KVR7 | 0.0 | A0A2J6KVR7_LACSA; Uncharacterized protein | ||||
STRING | XP_002510430.1 | 1e-98 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 3e-53 | bHLH family protein |