PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 387aa    MW: 42972 Da    PI: 7.7997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690518PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-11837PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-052833211255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ ++++ L++++ +      +K + a++L +A+ YIk Lq
  Lsa005496 283 RKEKLGDRIAALQQMVAPF-----GKTDTASVLMEAIGYIKFLQ 321
                7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-11281336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-5281325No hitNo description
Gene3DG3DSA:4.10.280.103.8E-9285328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MESSNFHQQH HDHQPLSDSS CYGVSWSQNP ILNNTSNDTN SRDQKQHLGT TPMIHELGLP  60
WNTNNNSNVT SINNPIESFM THELRRLGRT KDEFSGSESY PKFTEMIINS SPTSSIEDMQ  120
LKPDVLFRTF SNGCQIESNY DYQNGSSRSS SRGSFSQIFP TINISNLNQS PANSFDMNLP  180
ALDLFGSPRF NGSFSHPSSF NPHQLGSFFK DTCLSYGLDQ MHQPHRPAIC PSKISSAFNT  240
STTVCTEAKR PATNYIDTKP PQSTLPKKSK MEPRASCAPF KVRKEKLGDR IAALQQMVAP  300
FGKTDTASVL MEAIGYIKFL QNQVETLSVP YMKSTQKSNR LPTSGVSLME DGNEEAKRDL  360
RSRGLCLVPL SCLSYVTDGG GGVWQAP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023771981.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A2J6KVR70.0A0A2J6KVR7_LACSA; Uncharacterized protein
STRINGXP_002510430.11e-98(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-53bHLH family protein