PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005287
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 267aa    MW: 30158.6 Da    PI: 5.6528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-3880PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-084089154
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r++ +  rE+ RRd++N+ f eL  ll ++     +K++K++i   +++ +k+L
  Lsa005287 40 RKVQKADREKLRRDKLNEQFIELGHLLDPD----RPKNDKSSIIIDTIQILKDL 89
               5677889******************99997....79**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-1236107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1038109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.4173989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-64093No hitNo description
PfamPF000104.5E-64089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-44595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDQWNAKLEL HQQQYQHISN SHSDQRETAE VEVKDTSDAR KVQKADREKL RRDKLNEQFI  60
ELGHLLDPDR PKNDKSSIII DTIQILKDLT NEVNRLKAEC SALSEESCEL IQEKNELREE  120
KSSLKSDIEN LNTQYQQRVG VMYPWGGIDP SSVVMPPPFS YPVALPVPAG PLPIHPFPFY  180
ANHNPPGASI MPYPNPNPAN YHINNQTLPV YVSRSSKQES GNKSSEQFRG SNSNDEKGDN  240
SSDVVTDLEL KTPGSQVKRL LLPFGKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733292.10.0transcription factor bHLH121-like isoform X1
RefseqXP_023733297.10.0transcription factor bHLH121-like isoform X2
SwissprotQ9LT235e-63BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2J6MCP80.0A0A2J6MCP8_LACSA; Uncharacterized protein
STRINGEOX908492e-92(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.22e-55bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]