PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa004969 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | NF-YA | ||||||||||||
Protein Properties | Length: 256aa MW: 28871.5 Da PI: 9.8886 | ||||||||||||
Description | NF-YA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.4 | 1.8e-31 | 168 | 224 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e+e+k +ksrkpylheSRh hAlrR Rg+gGrF Lsa004969 168 EEPVFVNAKQYHGILRRRQCRAKAESEHKA-NKSRKPYLHESRHLHALRRSRGCGGRF 224 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-33 | 166 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.135 | 167 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.6E-27 | 169 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.6E-23 | 170 | 192 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 172 | 192 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.6E-23 | 201 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
XSGETVTRAE LVHNIPXAKR QLSHQGHRIK QTQKRKTSNI NLSFKLLTEN QVHQNCGSHS 60 IMSSSAPEFS DNSESEMQQS QMEGQIQCSS SPATTTTTGT SHPSNIQYPT LGQAAYPFPD 120 PYYRGTNIFN PYETQSYPAQ PYPGQPMVHL QFMGIQQAGV PLPSDTVEEP VFVNAKQYHG 180 ILRRRQCRAK AESEHKANKS RKPYLHESRH LHALRRSRGC GGRFEKKDKQ QKEKGSNDNN 240 PQSQSQMNIN LNSDKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-19 | 167 | 224 | 1 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023734088.1 | 1e-145 | nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
Swissprot | Q84JP1 | 2e-53 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2J6MCI0 | 1e-129 | A0A2J6MCI0_LACSA; Uncharacterized protein | ||||
STRING | VIT_10s0003g04650.t01 | 1e-79 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-52 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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