PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa004584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 35173.5 Da PI: 6.9194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45 | 1.9e-14 | 135 | 181 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Lsa004584 135 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 181 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-12 | 135 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-15 | 136 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 136 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-13 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.01E-5 | 145 | 184 | No hit | No description |
CDD | cd04873 | 7.18E-7 | 218 | 283 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGINDYSYTA SSEVSPILHS QQQPWILPQV FQHHNSSYTP DLTYPSGDHG TYLFPPPPPP 60 PPSSYGGLIH RRVPSGLQFA YEGSTSASSD HHLRLISETL GQMVQPGSMP FGLQAEMGKM 120 TSQEIMDAKA LAASKSHSEA ERRRRERINN HLAKLRSLLP STTKTDKASL LAEVIQHVKE 180 LKRQTSIIAE QSPVPTETDE LTIDNTSDED GNIVIRASLC CDDRSDLLPD LIKTLKALRL 240 RTLKAEITTL GGRVKNVLFI TGDQDSTNNN DTVNYSIGMI QEAFKAVMEK TNGDHESSSG 300 SVKRQRTNNI NVLDPRRT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 145 | ERRRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023756084.1 | 0.0 | transcription factor bHLH30-like | ||||
Refseq | XP_023756085.1 | 0.0 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 1e-106 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2J6LVC5 | 0.0 | A0A2J6LVC5_LACSA; Uncharacterized protein | ||||
STRING | POPTR_0008s11490.1 | 1e-132 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-91 | bHLH family protein |
Publications ? help Back to Top | |||
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