PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa004104 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||||||
Family | bHLH | ||||||||||||
Protein Properties | Length: 400aa MW: 44670.9 Da PI: 6.2867 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.5 | 3.2e-05 | 290 | 327 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L Lsa004104 290 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKLL 327 677888999*******998.....8****************88 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.846 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-5 | 288 | 331 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-11 | 288 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 292 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MAEDFQATVC SGSWWMSPRS NFSRSWCSSV LSDMDNFGPF MSRDLIMDMK SKSSDNKSSD 60 GSMIFHDIQK PSGIMSPDSA LQFMATTFSS SPPATTTDHW NQNLLLKVQE ELNTFPTSGD 120 HDDSTAVTEA DRHQDFTMDQ QQSFNSTTTF PVSSTSYEAY PSTLLQSFLD NNSPPPPPPP 180 PLQQLHQQPP YTFQPNSNDL NFIPKQHVPA FWNASGSTLD DNISSYFSSL SSQFLPSSYK 240 EKESRPNLII KRNHQEIRDM GSSAKKCSGE LPLKRPRLET PSPLPTFKVR KEKLGDRITA 300 LQQLVSPFGK TDTASVLHEA IDYIKLLHDQ VNILSAPYIK NGATKQLQQI DHDQKVKNAE 360 VHKQDLRSLG LCLVPVSSTF PVANGTATGF WTPSYEGSFR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023748860.1 | 0.0 | transcription factor bHLH112-like | ||||
TrEMBL | A0A2J6JHP8 | 0.0 | A0A2J6JHP8_LACSA; Uncharacterized protein | ||||
STRING | VIT_00s0274g00070.t01 | 5e-98 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.1 | 1e-49 | bHLH family protein |